RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CCDC42Q96M95 316 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 TEX13BQ9BXU2 312 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 ZNFX1Q9P2E3 1918 aaKnown RBP16.27■□□□□ 0.2
USP4-203ENST00000415188 POTEB3A0JP26 581 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 DNM1LO00429 736 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 COPB2P35606 906 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 MAGEA10P43363 369 aaPredicted RBP16.27■□□□□ 0.19
USP4-203ENST00000415188 KLK7P49862 253 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 SLC12A3P55017 1021 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 SPIRE1Q08AE8 756 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 KIF5AQ12840 1032 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 IKQ13123 557 aaPredicted RBP16.27■□□□□ 0.19
USP4-203ENST00000415188 CCDC40Q4G0X9 1142 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 POTEBQ6S5H4 581 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 NEK11Q8NG66 645 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 POLR3CQ9BUI4 534 aaPredicted RBP16.27■□□□□ 0.19
USP4-203ENST00000415188 EHMT1Q9H9B1 1298 aa16.27■□□□□ 0.19
USP4-203ENST00000415188 RAVER2Q9HCJ3 691 aaKnown RBP16.27■□□□□ 0.19
USP4-203ENST00000415188 LOXHD1Q8IVV2 1947 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 SSU72P8A0A1W2PR75 194 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 E9PMD0 336 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 SOX1O00570 391 aaPredicted RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 PLA2G6O60733 806 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 ZBED4O75132 1171 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 MED24O75448 989 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 MYCNP04198 464 aaPredicted RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 SSBP05455 408 aaKnown RBP eCLIP16.26■□□□□ 0.19
USP4-203ENST00000415188 KRT18P05783 430 aaKnown RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 TAL1P17542 331 aaPredicted RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 MAPK8IP2Q13387 824 aaPredicted RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 PDXDC1Q6P996 788 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 SYT2Q8N9I0 419 aaPredicted RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 LENG9Q96B70 501 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 TINF2Q9BSI4 451 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 SLC38A10Q9HBR0 1119 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 CEP72Q9P209 647 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 PUF60Q9UHX1 559 aaKnown RBP16.26■□□□□ 0.19
USP4-203ENST00000415188 FEM1BQ9UK73 627 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 DNM3Q9UQ16 869 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 LAMA3Q16787 3333 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 DNAH12Q6ZR08 3092 aa16.26■□□□□ 0.19
USP4-203ENST00000415188 A0A1W2PPC1 479 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 MCM3P25205 808 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 PRR16Q569H4 304 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 HERC4Q5GLZ8 1057 aaPredicted RBP16.25■□□□□ 0.19
USP4-203ENST00000415188 IQCEQ6IPM2 695 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 BAP1Q92560 729 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 KCTD10Q9H3F6 313 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 MMRN2Q9H8L6 949 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 ANKZF1Q9H8Y5 726 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 PRR12Q9ULL5 1215 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 CTDP1Q9Y5B0 961 aaPredicted RBP16.25■□□□□ 0.19
USP4-203ENST00000415188 SAR1BQ9Y6B6 198 aa16.25■□□□□ 0.19
USP4-203ENST00000415188 ATP2A1O14983 1001 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 PJA2O43164 708 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 ABL1P00519 1130 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 MUTP22033 750 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 BMP8BP34820 402 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 PLA2G4AP47712 749 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 STAT2P52630 851 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 LRRC41Q15345 812 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 TRIM59Q8IWR1 403 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 ARRDC4Q8NCT1 418 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 TRIM58Q8NG06 486 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 SECISBP2LQ93073 1101 aaKnown RBP16.24■□□□□ 0.19
USP4-203ENST00000415188 LRCH3Q96II8 777 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 UBXN6Q9BZV1 441 aa16.24■□□□□ 0.19
USP4-203ENST00000415188 LUC7LQ9NQ29 371 aaKnown RBP16.24■□□□□ 0.19
USP4-203ENST00000415188 DIS3Q9Y2L1 958 aaKnown RBP16.24■□□□□ 0.19
USP4-203ENST00000415188 PLXNA1Q9UIW2 1896 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 KBTBD13C9JR72 458 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 CETN3O15182 167 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 TACC1O75410 805 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 ZNF865P0CJ78 1059 aaPredicted RBP16.23■□□□□ 0.19
USP4-203ENST00000415188 GAP43P17677 238 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 KIF11P52732 1056 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 RTP1P59025 263 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 BMT2Q1RMZ1 405 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 NCAPH2Q6IBW4 605 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 CACNA2D4Q7Z3S7 1137 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 CATSPER3Q86XQ3 398 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 CHURC1Q8WUH1 139 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 SCFD1Q8WVM8 642 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 LENG1Q96BZ8 264 aaPredicted RBP16.23■□□□□ 0.19
USP4-203ENST00000415188 EEF2KMTQ96G04 330 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 IFIH1Q9BYX4 1025 aaKnown RBP16.23■□□□□ 0.19
USP4-203ENST00000415188 DEF6Q9H4E7 631 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 FAM207AQ9NSI2 230 aaPredicted RBP16.23■□□□□ 0.19
USP4-203ENST00000415188 ARHGAP20Q9P2F6 1191 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 TRIM10Q9UDY6 481 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 VAV3Q9UKW4 847 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 TRAF3IP3Q9Y228 551 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 PCDHA13Q9Y5I0 950 aa16.23■□□□□ 0.19
USP4-203ENST00000415188 DNAJC25-GNG10A0A024R161 153 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 LRRC53A6NM62 1247 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 CALUO43852 315 aaPredicted RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 EYA4O95677 639 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 SPATA31C1P0DKV0 1188 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 PRLRP16471 622 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 ZNF76P36508 570 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms