RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 ZNF410Q86VK4 478 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 RHPN2Q8IUC4 686 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 PIGOQ8TEQ8 1089 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 TCP11Q8WWU5 503 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 LINC01599Q8WXQ3 324 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 CCDC43Q96MW1 224 aaKnown RBP23.15■■□□□ 1.3
VSX1-204ENST00000409958 SCLT1Q96NL6 688 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 TSPYL2Q9H2G4 693 aaPredicted RBP23.15■■□□□ 1.3
VSX1-204ENST00000409958 TMX1Q9H3N1 280 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 DBR1Q9UK59 544 aaKnown RBP23.15■■□□□ 1.3
VSX1-204ENST00000409958 INSL6Q9Y581 213 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 MYO9BQ13459 2157 aa23.15■■□□□ 1.3
VSX1-204ENST00000409958 TTC3P53804 2025 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 DGAT1O75907 488 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 BMP15O95972 392 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 HTRA4P83105 476 aaPredicted RBP23.14■■□□□ 1.3
VSX1-204ENST00000409958 GRIN2CQ14957 1233 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 PSPC1Q8WXF1 523 aaKnown RBP23.14■■□□□ 1.3
VSX1-204ENST00000409958 ZNF668Q96K58 619 aaPredicted RBP23.14■■□□□ 1.3
VSX1-204ENST00000409958 MTRQ99707 1265 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 GCOM2Q9BZD3 368 aaPredicted RBP23.14■■□□□ 1.3
VSX1-204ENST00000409958 MTMR6Q9Y217 621 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 CHD9Q3L8U1 2897 aa23.14■■□□□ 1.3
VSX1-204ENST00000409958 ARID2Q68CP9 1835 aa23.14■■□□□ 1.29
VSX1-204ENST00000409958 STX6O43752 255 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 UPP2O95045 317 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 HSP90AA1P07900 732 aaKnown RBP23.13■■□□□ 1.29
VSX1-204ENST00000409958 CCT6AP40227 531 aaKnown RBP23.13■■□□□ 1.29
VSX1-204ENST00000409958 RESTQ13127 1097 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 POTEGQ6S5H5 508 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 SNX29Q8TEQ0 813 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 TMEM143Q96AN5 459 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 CDX2Q99626 313 aaPredicted RBP23.13■■□□□ 1.29
VSX1-204ENST00000409958 ATP6V0A4Q9HBG4 840 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 XPNPEP1Q9NQW7 623 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 BMP2KQ9NSY1 1161 aaPredicted RBP23.13■■□□□ 1.29
VSX1-204ENST00000409958 COL4A3BPQ9Y5P4 624 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 CDH23Q9H251 3354 aa23.13■■□□□ 1.29
VSX1-204ENST00000409958 A0A087WWV3 80 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 A0A087WZ62 844 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 LCHNA4D1U4 455 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 ASAP2O43150 1006 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 TAP1Q03518 808 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 KRT79Q5XKE5 535 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 FDXACB1Q9BRP7 624 aaPredicted RBP23.12■■□□□ 1.29
VSX1-204ENST00000409958 INO80BQ9C086 356 aaPredicted RBP23.12■■□□□ 1.29
VSX1-204ENST00000409958 STXBP5LQ9Y2K9 1186 aa23.12■■□□□ 1.29
VSX1-204ENST00000409958 MGEA5O60502 916 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 ARHGEF15O94989 841 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 ECM1Q16610 540 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 KSR1Q8IVT5 923 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 SP7Q8TDD2 431 aaPredicted RBP23.11■■□□□ 1.29
VSX1-204ENST00000409958 PRPF31Q8WWY3 499 aaKnown RBP23.11■■□□□ 1.29
VSX1-204ENST00000409958 MYLIPQ8WY64 445 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 NLRP4Q96MN2 994 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 YME1L1Q96TA2 773 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 RGS18Q9NS28 235 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 C1orf112Q9NSG2 853 aa23.11■■□□□ 1.29
VSX1-204ENST00000409958 DENND3A2RUS2 1198 aa23.1■■□□□ 1.29
VSX1-204ENST00000409958 PDIA4P13667 645 aaKnown RBP23.1■■□□□ 1.29
VSX1-204ENST00000409958 LAMTOR4Q0VGL1 99 aa23.1■■□□□ 1.29
VSX1-204ENST00000409958 DSC3Q14574 896 aa23.1■■□□□ 1.29
VSX1-204ENST00000409958 SF3A1Q15459 793 aaKnown RBP23.1■■□□□ 1.29
VSX1-204ENST00000409958 NPAS4Q8IUM7 802 aa23.1■■□□□ 1.29
VSX1-204ENST00000409958 ADAM2Q99965 735 aa23.1■■□□□ 1.29
VSX1-204ENST00000409958 ZSCAN16Q9H4T2 348 aaPredicted RBP23.1■■□□□ 1.29
VSX1-204ENST00000409958 KIAA1024Q9UPX6 916 aa23.1■■□□□ 1.29
VSX1-204ENST00000409958 VWA3AA6NCI4 1184 aa23.09■■□□□ 1.29
VSX1-204ENST00000409958 PP2D1A8MPX8 630 aa23.09■■□□□ 1.29
VSX1-204ENST00000409958 USO1O60763 962 aaKnown RBP23.09■■□□□ 1.29
VSX1-204ENST00000409958 STAG3L1P0CL83 205 aa23.09■■□□□ 1.29
VSX1-204ENST00000409958 SARSP49591 514 aaKnown RBP23.09■■□□□ 1.29
VSX1-204ENST00000409958 MXD4Q14582 209 aaPredicted RBP23.09■■□□□ 1.29
VSX1-204ENST00000409958 CRIPAKQ8N1N5 446 aa23.09■■□□□ 1.29
VSX1-204ENST00000409958 PRDM12Q9H4Q4 367 aa23.09■■□□□ 1.29
VSX1-204ENST00000409958 IFT122Q9HBG6 1241 aa23.09■■□□□ 1.29
VSX1-204ENST00000409958 RNF216Q9NWF9 866 aaPredicted RBP23.09■■□□□ 1.29
VSX1-204ENST00000409958 LINC01553A4QN01 128 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 ARHGEF35A5YM69 484 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 C9IYK1 514 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 ZSCAN20P17040 1043 aaPredicted RBP23.08■■□□□ 1.29
VSX1-204ENST00000409958 SFPQP23246 707 aaKnown RBP eCLIP23.08■■□□□ 1.29
VSX1-204ENST00000409958 CDC25AP30304 524 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 ARL2P36404 184 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 SLC24A5Q71RS6 500 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 MCPH1Q8NEM0 835 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 MMTAG2Q9BU76 263 aaKnown RBP23.08■■□□□ 1.29
VSX1-204ENST00000409958 DDX19AQ9NUU7 478 aaKnown RBP23.08■■□□□ 1.29
VSX1-204ENST00000409958 CHD7Q9P2D1 2997 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 COL4A6Q14031 1691 aa23.08■■□□□ 1.29
VSX1-204ENST00000409958 CSDE1O75534 798 aaKnown RBP23.08■■□□□ 1.28
VSX1-204ENST00000409958 SRGAP2CP0DJJ0 459 aa23.08■■□□□ 1.28
VSX1-204ENST00000409958 FGFR4P22455 802 aa23.08■■□□□ 1.28
VSX1-204ENST00000409958 SRGAP1Q7Z6B7 1085 aa23.08■■□□□ 1.28
VSX1-204ENST00000409958 RNF149Q8NC42 400 aa23.08■■□□□ 1.28
VSX1-204ENST00000409958 AK8Q96MA6 479 aa23.08■■□□□ 1.28
VSX1-204ENST00000409958 RC3H2Q9HBD1 1191 aaKnown RBP23.08■■□□□ 1.28
VSX1-204ENST00000409958 DGKIO75912 1065 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 CYP11B2P19099 503 aa23.07■■□□□ 1.28
VSX1-204ENST00000409958 ERVK-21P61565 698 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms