RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ITSN1Q15811 1721 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 EMSYQ7Z589 1322 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 CLDN3O15551 220 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ONECUT3O60422 494 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 N4BP1O75113 896 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PRKCZQ05513 592 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 STARD3Q14849 445 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SCYL2Q6P3W7 929 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 GSTA5Q7RTV2 222 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SDCCAG8Q86SQ7 713 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 VSIG1Q86XK7 387 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ZNF558Q96NG5 402 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SRRDQ9UH36 339 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PCDHA10Q9Y5I2 948 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 GOLGA8CPA6NN73 597 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SPTLC2O15270 562 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 RAP1GDS1P52306 607 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SPAG1Q07617 926 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ELAVL2Q12926 359 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 KCNB1Q14721 858 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 MFSD10Q14728 455 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ITIH5Q86UX2 942 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 C12orf50Q8NA57 414 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 GDAP1Q8TB36 358 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 CLMNQ96JQ2 1002 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 KCNK9Q9NPC2 374 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 TXNDC16Q9P2K2 825 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ASAP2O43150 1006 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PRELPP51888 382 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 RTP1P59025 263 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 DYNC1I2Q13409 638 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ATAT1Q5SQI0 421 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ZMYM1Q5SVZ6 1142 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 CCDC127Q96BQ5 260 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 SPDL1Q96EA4 605 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PAWRQ96IZ0 340 aaKnown RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 RMDN2Q96LZ7 410 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 PLEKHF1Q96S99 279 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 TUBE1Q9UJT0 475 aa7.88□□□□□ -1.15
SCN9A-202ENST00000409435 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.88□□□□□ -1.15
SCN9A-202ENST00000409435 ARHGEF9O43307 516 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 CLTBP09497 229 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TNFAIP3P21580 790 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 CYLC1P35663 651 aaPredicted RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TSTA3Q13630 321 aaPredicted RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PDXDC1Q6P996 788 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 VPS52Q8N1B4 723 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TSC1Q92574 1164 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TTC25Q96NG3 672 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 NXF1Q9UBU9 619 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 KIAA1024Q9UPX6 916 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 GPR75-ASB3A0A0A6YYF3 556 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 GAP43P17677 238 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PTPRAP18433 802 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 U2AF2P26368 475 aaKnown RBP eCLIP7.87□□□□□ -1.151e-6■■■□□ 19.1
SCN9A-202ENST00000409435 RANBP1P43487 201 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 QRICH1Q2TAL8 776 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 IRAK1BP1Q5VVH5 260 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 ADGRF4Q8IZF3 695 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 SKA2Q8WVK7 121 aaPredicted RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 ACAP3Q96P50 834 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TACO1Q9BSH4 297 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TSEN34Q9BSV6 310 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 APOL5Q9BWW9 433 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 MRPL4Q9BYD3 311 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 CCDC68Q9H2F9 335 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 UBN1Q9NPG3 1134 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 GMEB2Q9UKD1 530 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 BIN1O00499 593 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PPP1R12AO14974 1030 aaPredicted RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 CYP27A1Q02318 531 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 MUM1L1Q5H9M0 696 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PPP1R18Q6NYC8 613 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 XRRA1Q6P2D8 792 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 SH3GL3Q99963 347 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TMEM206Q9H813 350 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 DONSONQ9NYP3 566 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 MTRF1LQ9UGC7 380 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 SRPRBQ9Y5M8 271 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TLR2O60603 784 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 ALDH1A2O94788 518 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 IL1R1P14778 569 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PPM1AP35813 382 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PDE6CP51160 858 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PSMC5P62195 406 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 MXD4Q14582 209 aaPredicted RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 KLHL40Q2TBA0 621 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 RBM23Q86U06 439 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 NEDD1Q8NHV4 660 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 STN1Q9H668 368 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PAIP2BQ9ULR5 123 aaKnown RBP7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PTCH2Q9Y6C5 1203 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 MYL4P12829 197 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 PSEN2P49810 448 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 DMTNQ08495 405 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 CROCCP2Q86T23 111 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TEX2Q8IWB9 1127 aa7.87□□□□□ -1.15
SCN9A-202ENST00000409435 TBCKQ8TEA7 893 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms