RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GET4Q7L5D6 327 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 SRLQ86TD4 932 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 MIB1Q86YT6 1006 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 RIOX2Q8IUF8 465 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 FAM126BQ8IXS8 530 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 TTC30BQ8N4P2 665 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 CPA6Q8N4T0 437 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 USP7Q93009 1102 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 CCDC140Q96MF4 163 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 SERINC2Q96SA4 455 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 GORASP1Q9BQQ3 440 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 CSRNP2Q9H175 543 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 IFT122Q9HBG6 1241 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 SMPD4Q9NXE4 827 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 ANKRD6Q9Y2G4 727 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 TRAV20A0A0B4J274 112 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 K7ESF4 209 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 FZD9O00144 591 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 ZEB2O60315 1214 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 PRKD3O94806 890 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 SNUPNO95149 360 aaKnown RBP4.96□□□□□ -1.62
HMGB1-204ENST00000399489 CPP00450 1065 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 SETSIPP0DME0 302 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 CYP2C19P33261 490 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 IARSP41252 1262 aaKnown RBP4.96□□□□□ -1.62
HMGB1-204ENST00000399489 TERF1P54274 439 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 NKX3-2P78367 333 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 PUM1Q14671 1186 aaKnown RBP eCLIP4.96□□□□□ -1.621e-7■■■□□ 17.8
HMGB1-204ENST00000399489 SURF1Q15526 300 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 ELF2Q15723 593 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 SV2CQ496J9 727 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 ARHGAP29Q52LW3 1261 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 TMEM240Q5SV17 173 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 C1QTNF12Q5T7M4 302 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 PPP4R3AQ6IN85 833 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 BRAPQ7Z569 592 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 MILR1Q7Z6M3 343 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 PLEKHH3Q7Z736 793 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 ZNF513Q8N8E2 541 aaPredicted RBP4.96□□□□□ -1.62
HMGB1-204ENST00000399489 CHST13Q8NET6 341 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 LOXL4Q96JB6 756 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 AIFM3Q96NN9 605 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 CTDP1Q9Y5B0 961 aaPredicted RBP4.96□□□□□ -1.62
HMGB1-204ENST00000399489 ZNF536O15090 1300 aa4.96□□□□□ -1.62
HMGB1-204ENST00000399489 MROH6A6NGR9 719 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 hCG_1984214I3L0E3 225 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 AGRPO00253 132 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 SGSM2O43147 1006 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 ZRANB2O95218 330 aaKnown RBP eCLIP4.95□□□□□ -1.62
HMGB1-204ENST00000399489 AGR2O95994 175 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 SNRPB2P08579 225 aaKnown RBP4.95□□□□□ -1.62
HMGB1-204ENST00000399489 ADCY1Q08828 1119 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 DDX10Q13206 875 aaKnown RBP4.95□□□□□ -1.62
HMGB1-204ENST00000399489 INAVAQ3KP66 663 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 ALDH1L2Q3SY69 923 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 MZT2AQ6P582 158 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 CEP68Q76N32 757 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 MAATS1Q7Z4T9 603 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 SKAP1Q86WV1 359 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 SCUBE1Q8IWY4 988 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 FAM186BQ8IYM0 893 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 SLC7A14Q8TBB6 771 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 POF1BQ8WVV4 589 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 DPF3Q92784 378 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 TMEM169Q96HH4 297 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 CHAMP1Q96JM3 812 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 TNIP3Q96KP6 325 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 MRGPRX3Q96LB0 322 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 IPO9Q96P70 1041 aaKnown RBP4.95□□□□□ -1.62
HMGB1-204ENST00000399489 AARSD1Q9BTE6 412 aaKnown RBP4.95□□□□□ -1.62
HMGB1-204ENST00000399489 LRRC27Q9C0I9 530 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 PCDHGB3Q9Y5G1 929 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 DUSP10Q9Y6W6 482 aa4.95□□□□□ -1.62
HMGB1-204ENST00000399489 PLATP00750 562 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 C6orf222P0C671 652 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 JMJD7P0C870 316 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 MYBL2P10244 700 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 RBP3P10745 1247 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 ECI1P42126 302 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 KCNJ6P48051 423 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 CCT5P48643 541 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 ALDH5A1P51649 535 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 AK2P54819 239 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 ERVK-21P61565 698 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 SUMO1P63165 101 aaKnown RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 INF2Q27J81 1249 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 TUBB8Q3ZCM7 444 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 PRAMEF18Q5VWM3 479 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 GLB1LQ6UWU2 654 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 RASSF3Q86WH2 238 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 CREBRFQ8IUR6 639 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 TTC9BQ8N6N2 239 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 GSTCDQ8NEC7 633 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 IL17REQ8NFR9 667 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 NPLOC4Q8TAT6 608 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 FUBP3Q96I24 572 aaKnown RBP eCLIP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 LRGUKQ96M69 825 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 SAMD11Q96NU1 681 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 WRNIP1Q96S55 665 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 SLC52A2Q9HAB3 445 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms