RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 HOMER3Q9NSC5 361 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 PNMA3Q9UL41 463 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 MYH8P13535 1937 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 LDHBP07195 334 aaKnown RBP9.53□□□□□ -0.88
RTN4-206ENST00000394611 SF3B3Q15393 1217 aaKnown RBP9.53□□□□□ -0.88
RTN4-206ENST00000394611 TAOK1Q7L7X3 1001 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 METTL13Q8N6R0 699 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 FBXO25Q8TCJ0 367 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 AGAP11Q8TF27 550 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 CELF1Q92879 486 aaKnown RBP9.53□□□□□ -0.88
RTN4-206ENST00000394611 EYA3Q99504 573 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 IKZF4Q9H2S9 585 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 CTNNAL1Q9UBT7 734 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 GOLGA8IPA6NC78 632 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 ARHGAP42A6NI28 874 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 GOLGA8JA6NMD2 632 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 PPFIA2O75334 1257 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 BRAFP15056 766 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 SMTNP53814 917 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 ATXN3P54252 364 aaPredicted RBP9.53□□□□□ -0.88
RTN4-206ENST00000394611 DYNLT1P63172 113 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 SATB1Q01826 763 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 RBM26Q5T8P6 1007 aaKnown RBP9.53□□□□□ -0.88
RTN4-206ENST00000394611 IRF2BP1Q8IU81 584 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 NUDCD1Q96RS6 583 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 TTC1Q99614 292 aa9.53□□□□□ -0.88
RTN4-206ENST00000394611 CNOT8Q9UFF9 292 aaKnown RBP9.53□□□□□ -0.88
RTN4-206ENST00000394611 SERPING1P05155 500 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 KITP10721 976 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 KLRK1P26718 216 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 PMS2P54278 862 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 OVGP1Q12889 678 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 IL17AQ16552 155 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 ERICH1Q86X53 443 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 SPATS2Q86XZ4 545 aaKnown RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 PPFIBP2Q8ND30 876 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 OSBPL7Q9BZF2 842 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 SEMA6BQ9H3T3 888 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 HOMER2Q9NSB8 354 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 TSKSQ9UJT2 592 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 GRIN2DO15399 1336 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 ATP6V1G2O95670 118 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 AARSP49588 968 aaKnown RBP eCLIP9.52□□□□□ -0.895e-8■■■□□ 16.6
RTN4-206ENST00000394611 ZNF844Q08AG5 666 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 PKN1Q16512 942 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 EPC2Q52LR7 807 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 TTI2Q6NXR4 508 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 TRPM8Q7Z2W7 1104 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 ERP27Q96DN0 273 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 PWWP2AQ96N64 755 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 TGS1Q96RS0 853 aaKnown RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 PITPNM3Q9BZ71 974 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 IQCGQ9H095 443 aaKnown RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 EMILIN3Q9NT22 766 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 MTUS1Q9ULD2 1270 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 SLURP2P0DP57 97 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 HIBADHP31937 336 aaKnown RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 CTCFP49711 727 aaPredicted RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 ADCY7P51828 1080 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 DNAJC3Q13217 504 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 ZRSR2Q15696 482 aaKnown RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 PDXDC2PQ6P474 469 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 PDXDC1Q6P996 788 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 HS2ST1Q7LGA3 356 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 C18orf8Q96DM3 657 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 DNAJC7Q99615 494 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 SHCBP1LQ9BZQ2 653 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 UBXN6Q9BZV1 441 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 SEMA4AQ9H3S1 761 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 GPR108Q9NPR9 543 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 KCND1Q9NSA2 647 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 DDX25Q9UHL0 483 aaKnown RBP9.52□□□□□ -0.89
RTN4-206ENST00000394611 IKBKGQ9Y6K9 419 aa9.52□□□□□ -0.89
RTN4-206ENST00000394611 CCT8L1PA6NM43 557 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 A6NNZ2 444 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 SEMA3EO15041 775 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 CIAO1O76071 339 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 CA4P22748 312 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 MECOMQ03112 1051 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 TUBB8Q3ZCM7 444 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 CRY2Q49AN0 593 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 KDM7AQ6ZMT4 941 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 CTAGE3PQ8IX95 158 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 CCDC124Q96CT7 223 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 NUDT12Q9BQG2 462 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 NEUROG2Q9H2A3 272 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 HAO1Q9UJM8 370 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 TACC3Q9Y6A5 838 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 COL11A2P13942 1736 aaPredicted RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 C10orf71Q711Q0 1435 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 SPEF2Q9C093 1822 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 CFAP69A5D8W1 941 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 F5H423 210 aaPredicted RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 DPEP1P16444 411 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 ATP2A2P16615 1042 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 HOXA13P31271 388 aaPredicted RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 PPP2R5DQ14738 602 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 KYNUQ16719 465 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 MMGT1Q8N4V1 131 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 PDCD7Q8N8D1 485 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms