RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 KIF11P52732 1056 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 MKRN3Q13064 507 aaKnown RBP12.12□□□□□ -0.47
CUX1-204ENST00000393824 USH1GQ495M9 461 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 LDLRAD1Q5T700 205 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 CDCA2Q69YH5 1023 aaPredicted RBP12.12□□□□□ -0.47
CUX1-204ENST00000393824 RUFY4Q6ZNE9 571 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 MAATS1Q7Z4T9 603 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 CCHCR1Q8TD31 782 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 HVCN1Q96D96 273 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 TRIM47Q96LD4 638 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 PSMB7Q99436 277 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 DISC1Q9NRI5 854 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 SPATS2LQ9NUQ6 558 aaKnown RBP12.12□□□□□ -0.47
CUX1-204ENST00000393824 ETAA1Q9NY74 926 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 PNMA6FA0A0J9YX94 578 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 FRMD3A2A2Y4 597 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 MYBP10242 640 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 SMARCA1P28370 1054 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 IREB2P48200 963 aaKnown RBP12.12□□□□□ -0.47
CUX1-204ENST00000393824 KLK7P49862 253 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 NLRP5P59047 1200 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 ADCY2Q08462 1091 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 ACCSLQ4AC99 568 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 COBLL1Q53SF7 1204 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 AGBL2Q5U5Z8 902 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 CCDC174Q6PII3 467 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 ANKRD13AQ8IZ07 590 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 KIRREL3Q8IZU9 778 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 CCDC47Q96A33 483 aaKnown RBP12.12□□□□□ -0.47
CUX1-204ENST00000393824 SH3GL3Q99963 347 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 TANGO6Q9C0B7 1094 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 CCSER1Q9C0I3 900 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 HOMER3Q9NSC5 361 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 SYNPO2Q9UMS6 1093 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 CSADQ9Y600 493 aa12.12□□□□□ -0.47
CUX1-204ENST00000393824 DCAF8L1A6NGE4 600 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 LAD1O00515 517 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 NCK2O43639 380 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 KLRC4O43908 158 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 GSTA1P08263 222 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 HOXA7P31268 230 aaPredicted RBP12.11□□□□□ -0.47
CUX1-204ENST00000393824 NAPAP54920 295 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 PPP2R2AP63151 447 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 AP1ARQ63HQ0 302 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 NSMCE1Q8WV22 266 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 RAPGEF5Q92565 580 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 OPTNQ96CV9 577 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 MS4A14Q96JA4 679 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 DUSP9Q99956 384 aaKnown RBP12.11□□□□□ -0.47
CUX1-204ENST00000393824 KBTBD4Q9NVX7 518 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 TMEM260Q9NX78 707 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 SEC63Q9UGP8 760 aaKnown RBP12.11□□□□□ -0.47
CUX1-204ENST00000393824 SALL4Q9UJQ4 1053 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 HTTP42858 3142 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 ZNF536O15090 1300 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 CCNE1P24864 410 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 GCKP35557 465 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 HSD17B3P37058 310 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 MAGEA1P43355 309 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 UBE2SQ16763 222 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 MIIPQ5JXC2 388 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 PIK3AP1Q6ZUJ8 805 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 LMBR1Q8WVP7 490 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 TBC1D5Q92609 795 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 NOX5Q96PH1 765 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 ZMYND12Q9H0C1 365 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 ISCUQ9H1K1 167 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 C15orf41Q9Y2V0 281 aa12.11□□□□□ -0.47
CUX1-204ENST00000393824 SMCO2A6NFE2 343 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 SPDYE5A6NIY4 337 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 FLOT1O75955 427 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 MCM7P33993 719 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 EIF4A3P38919 411 aaKnown RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 MOGSQ13724 837 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 HIBCHQ6NVY1 386 aaPredicted RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 CSGALNACT2Q8N6G5 542 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 LPAR1Q92633 364 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 LRRC45Q96CN5 670 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 SPDL1Q96EA4 605 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 AGBL1Q96MI9 1066 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 GINM1Q9NU53 330 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 PCDHA6Q9UN73 950 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 PCDHA8Q9Y5H6 950 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 PCDHA1Q9Y5I3 950 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 CCT8L1PA6NM43 557 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L15C9J2P7 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L13C9JLJ4 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L11C9JVI0 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L18D6R9N7 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L22D6RA61 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L17D6RBQ6 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L19D6RCP7 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 USP17L20D6RJB6 530 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 WDR46O15213 610 aaKnown RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 EDIL3O43854 480 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 AKR1B10O60218 316 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 BUB1BO60566 1050 aaPredicted RBP12.1□□□□□ -0.47
CUX1-204ENST00000393824 DRD4P21917 467 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 TMOD1P28289 359 aa12.1□□□□□ -0.47
CUX1-204ENST00000393824 PRPHP41219 470 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms