RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SLC10A5Q5PT55 438 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 FAM196AQ6ZSG2 479 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 ATICP31939 592 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 RTKN2Q8IZC4 609 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 RAB42Q8N4Z0 105 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 FTOQ9C0B1 505 aaKnown RBP eCLIP13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 KDM4CQ9H3R0 1056 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 ADAM22Q9P0K1 906 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 ZFP69BQ9UJL9 534 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 DBNLQ9UJU6 430 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 MYO5CQ9NQX4 1742 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 PBRM1Q86U86 1689 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 DENND3A2RUS2 1198 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 CLDN3O15551 220 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 KRT4P19013 534 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 LLGL1Q15334 1064 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 STX19Q8N4C7 294 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 TRIM62Q9BVG3 475 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 NOP53Q9NZM5 478 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 CEP72Q9P209 647 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 MMEP08473 750 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 TBXAS1P24557 533 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 MED21Q13503 144 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 PROM2Q8N271 834 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 MCPH1Q8NEM0 835 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 PDCD6IPQ8WUM4 868 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 PARD6BQ9BYG5 372 aa13.65□□□□□ -0.22
CCDC88C-204ENST00000389857 HLA-DPA1P20036 260 aa13.65□□□□□ -0.23
CCDC88C-204ENST00000389857 NAALADL2Q58DX5 795 aa13.65□□□□□ -0.23
CCDC88C-204ENST00000389857 SLC27A3Q5K4L6 730 aa13.65□□□□□ -0.23
CCDC88C-204ENST00000389857 LCORLQ8N3X6 602 aa13.65□□□□□ -0.23
CCDC88C-204ENST00000389857 MXD3Q9BW11 206 aa13.65□□□□□ -0.23
CCDC88C-204ENST00000389857 WARS2Q9UGM6 360 aaKnown RBP13.65□□□□□ -0.23
CCDC88C-204ENST00000389857 HDLBPQ00341 1268 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 MAP3K10Q02779 954 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 ZC3H18Q86VM9 953 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 TMEM35BQ8NCS4 154 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 EML4Q9HC35 981 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 SAMSN1Q9NSI8 373 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 DNAJC17Q9NVM6 304 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 UBE4BO95155 1302 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 UBN2Q6ZU65 1347 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 RASA4BC9J798 803 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 RASA4O43374 803 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 AP2B1P63010 937 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 DALRD3Q5D0E6 543 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 SH3TC2Q8TF17 1288 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 TRIM54Q9BYV2 358 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 PUS3Q9BZE2 481 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 IFNAR1P17181 557 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 GPC5P78333 572 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 LBRQ14739 615 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 ALKBH5Q6P6C2 394 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 EFHBQ8N7U6 833 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 RMDN2Q96LZ7 410 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 DACH2Q96NX9 599 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF341Q9BYN7 854 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 SLC7A5P2Q9GIP4 190 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 ABCC2Q92887 1545 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 ASAP2O43150 1006 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 TMEM179Q6ZVK1 233 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 NUDCD3Q8IVD9 361 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 FOXP4Q8IVH2 680 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 KRT8P05787 483 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 MTMR1Q13613 665 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 CASP8Q14790 479 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 ITPRIPL1Q6GPH6 555 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 YY1AP1Q9H869 796 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 NFU1Q9UMS0 254 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 PRELPP51888 382 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 STXBP2Q15833 593 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 MAPK6Q16659 721 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 TBC1D9BQ66K14 1250 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 TTC39CQ8N584 583 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 AFG1LQ8WV93 481 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 FAM49AQ9H0Q0 323 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 SP110Q9HB58 689 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 SEL1LQ9UBV2 794 aa13.64□□□□□ -0.23
CCDC88C-204ENST00000389857 PI4K2BG5E9Z4 385 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 EIF2AK2P19525 551 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 HOXA13P31271 388 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 CDK8P49336 464 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 SMYD3Q9H7B4 428 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 DDX56Q9NY93 547 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 FEM1BQ9UK73 627 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 MYBL1P10243 752 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 ADCK5Q3MIX3 580 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 HIBCHQ6NVY1 386 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 TSC22D3Q99576 134 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF772Q68DY9 489 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 ANKS3Q6ZW76 656 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 UNC13DQ70J99 1090 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 GPBP1L1Q9HC44 474 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 CNOT8Q9UFF9 292 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 SYNMO15061 1565 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 ZRANB2O95218 330 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 CYP21A2P08686 494 aa13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 GNL1P36915 607 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-204ENST00000389857 GRIN1Q05586 938 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms