RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 STBD1O95210 358 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 ATP4AP20648 1035 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 SP3Q02447 781 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 ARHGAP1Q07960 439 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 TBX2Q13207 712 aaPredicted RBP13.69□□□□□ -0.22
CIITA-202ENST00000381835 TEX35Q5T0J7 233 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 GLG1Q92896 1179 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 FGFBP2Q9BYJ0 223 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 AZI2Q9H6S1 392 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 COL4A3BPQ9Y5P4 624 aa13.69□□□□□ -0.22
CIITA-202ENST00000381835 TRIM49BA6NDI0 452 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 STX10O60499 249 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 GH1P01241 217 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 SMPD1P17405 629 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 ADKP55263 362 aaKnown RBP13.68□□□□□ -0.22
CIITA-202ENST00000381835 XKR3Q5GH77 459 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 FAM160B1Q5W0V3 765 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 SPECC1LQ69YQ0 1117 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 TRIM50Q86XT4 487 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 MYCT1Q8N699 235 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 CALCOCO1Q9P1Z2 691 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 RWDD2AQ9UIY3 292 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 GABRQQ9UN88 632 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 POLR3GO15318 223 aaPredicted RBP13.68□□□□□ -0.22
CIITA-202ENST00000381835 ATP8B1O43520 1251 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 HIP1RO75146 1068 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 GUCY2CP25092 1073 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 MARK3P27448 753 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 FLT3LGP49771 235 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 PMS1P54277 932 aaKnown RBP13.68□□□□□ -0.22
CIITA-202ENST00000381835 LAMC2Q13753 1193 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 KIF22Q14807 665 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 MTERF2Q49AM1 385 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 WDR24Q96S15 920 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 EPC1Q9H2F5 836 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 PARVGQ9HBI0 331 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 PCDHA2Q9Y5H9 948 aa13.68□□□□□ -0.22
CIITA-202ENST00000381835 OATP04181 439 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 CAP1Q01518 475 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 PPP2R3AQ06190 1150 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 DUSP28Q4G0W2 176 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 SPATA1Q5VX52 437 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 OLFML2BQ68BL8 750 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 IQSEC1Q6DN90 963 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 TOGARAM2Q6ZUX3 1019 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 GPR161Q8N6U8 529 aaKnown RBP13.67□□□□□ -0.22
CIITA-202ENST00000381835 TC2NQ8N9U0 490 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 AFG1LQ8WV93 481 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 DHTKD1Q96HY7 919 aaPredicted RBP13.67□□□□□ -0.22
CIITA-202ENST00000381835 MRPL44Q9H9J2 332 aaKnown RBP13.67□□□□□ -0.22
CIITA-202ENST00000381835 CYP26B1Q9NR63 512 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 SAMSN1Q9NSI8 373 aaKnown RBP13.67□□□□□ -0.22
CIITA-202ENST00000381835 ODF2LQ9ULJ1 636 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 ADCY6O43306 1168 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 TNFAIP2Q03169 654 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 PRKCZQ05513 592 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 MYOCDQ8IZQ8 938 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 DAW1Q8N136 415 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 GUF1Q8N442 669 aaKnown RBP13.67□□□□□ -0.22
CIITA-202ENST00000381835 AFAP1L1Q8TED9 768 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 GPRC5CQ9NQ84 441 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 MRFAP1Q9Y605 127 aa13.67□□□□□ -0.22
CIITA-202ENST00000381835 CEP350Q5VT06 3117 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 GAP43P17677 238 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 PPP1R2P41236 205 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 CASP5P51878 434 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 MAPK7Q13164 816 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 COBLL1Q53SF7 1204 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 ODR4Q5SWX8 454 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 FAM102BQ5T8I3 360 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 NELFCDQ8IXH7 590 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 OR6J1Q8NGC5 347 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 P2RX5Q93086 422 aa13.66□□□□□ -0.22
CIITA-202ENST00000381835 LGR5O75473 907 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 GCNT3O95395 438 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 ZNF865P0CJ78 1059 aaPredicted RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 ZNF18P17022 549 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 CCNE1P24864 410 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 SOX10P56693 466 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 CC2D1AQ6P1N0 951 aaPredicted RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 PPTC7Q8NI37 304 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 LENG1Q96BZ8 264 aaPredicted RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 EEF2KMTQ96G04 330 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 SEMA6BQ9H3T3 888 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 NRBP2Q9NSY0 501 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 MYBP10242 640 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 XRCC5P13010 732 aaKnown RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 NMT1P30419 496 aaKnown RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 ZNF131P52739 623 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 ANKRD40Q6AI12 368 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 FAM178BQ8IXR5 827 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 CD99L2Q8TCZ2 262 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 SCFD1Q8WVM8 642 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 EMID1Q96A84 441 aaPredicted RBP13.65□□□□□ -0.22
CIITA-202ENST00000381835 CFHR5Q9BXR6 569 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 SMARCAD1Q9H4L7 1026 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 OLFML3Q9NRN5 406 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 EMSYQ7Z589 1322 aa13.65□□□□□ -0.22
CIITA-202ENST00000381835 BICDL2A1A5D9 508 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms