RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ERVK-5Q9HDB9 667 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 ASTN1O14525 1302 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 IGKV6D-41A0A0C4DH26 115 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 EVI5O60447 810 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 ATP6V1G2O95670 118 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 AKR1B1P15121 316 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 LMNB1P20700 586 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 RPL13P26373 211 aaKnown RBP22.92■■□□□ 1.26
UPF3A-202ENST00000375299 CASP4P49662 377 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 PLS1Q14651 629 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 TTBK2Q6IQ55 1244 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 PIGWQ7Z7B1 504 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 CLEC10AQ8IUN9 316 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 SLC12A4Q9UP95 1085 aa22.92■■□□□ 1.26
UPF3A-202ENST00000375299 DHX34Q14147 1143 aaKnown RBP22.91■■□□□ 1.26
UPF3A-202ENST00000375299 BMT2Q1RMZ1 405 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 HIBCHQ6NVY1 386 aaPredicted RBP22.91■■□□□ 1.26
UPF3A-202ENST00000375299 IGSF9BQ9UPX0 1349 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 ZBTB5O15062 677 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 COPB2P35606 906 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 PPP1R7Q15435 360 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 KIAA1755Q5JYT7 1200 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 CATSPER3Q86XQ3 398 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 SLFN12Q8IYM2 578 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 SYT2Q8N9I0 419 aaPredicted RBP22.91■■□□□ 1.26
UPF3A-202ENST00000375299 CTNNBL1Q8WYA6 563 aaPredicted RBP22.91■■□□□ 1.26
UPF3A-202ENST00000375299 RNF25Q96BH1 459 aaPredicted RBP22.91■■□□□ 1.26
UPF3A-202ENST00000375299 NOD2Q9HC29 1040 aa22.91■■□□□ 1.26
UPF3A-202ENST00000375299 SOX5P35711 763 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 PSEN1P49768 467 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 PABPC4Q13310 644 aaKnown RBP eCLIP22.9■■□□□ 1.261e-6■■■■■ 56.2
UPF3A-202ENST00000375299 ZDHHC24Q6UX98 284 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 DPP8Q6V1X1 898 aaPredicted RBP22.9■■□□□ 1.26
UPF3A-202ENST00000375299 ADAT2Q7Z6V5 191 aaKnown RBP22.9■■□□□ 1.26
UPF3A-202ENST00000375299 JAMLQ86YT9 394 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 GLYCTKQ8IVS8 523 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 CNBD1Q8NA66 436 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 AZI2Q9H6S1 392 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 LTBP4Q8N2S1 1624 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 PLTPP55058 493 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 PSMC6P62333 389 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 GPSM2P81274 684 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 AEBP2Q6ZN18 517 aaPredicted RBP22.9■■□□□ 1.26
UPF3A-202ENST00000375299 LRRC34Q8IZ02 419 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 CCDC63Q8NA47 563 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 GLG1Q92896 1179 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 MIEF2Q96C03 454 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 C8orf37Q96NL8 207 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 CD209Q9NNX6 404 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 SNX24Q9Y343 169 aa22.9■■□□□ 1.26
UPF3A-202ENST00000375299 TLDC2A0PJX2 215 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 USP17L10C9JJH3 530 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 KIAA0391O15091 583 aaKnown RBP22.89■■□□□ 1.26
UPF3A-202ENST00000375299 RGS16O15492 202 aaPredicted RBP22.89■■□□□ 1.26
UPF3A-202ENST00000375299 TTLL1O95922 423 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 SLC16A2P36021 539 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 DRG2P55039 364 aaKnown RBP22.89■■□□□ 1.26
UPF3A-202ENST00000375299 CHADLQ6NUI6 762 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 TLDC1Q6P9B6 456 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 NGLY1Q96IV0 654 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 MBOAT7Q96N66 472 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 SAMD15Q9P1V8 674 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 RASAL2Q9UJF2 1139 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 DNM3Q9UQ16 869 aa22.89■■□□□ 1.26
UPF3A-202ENST00000375299 CYP3A7-CYP3A51PA0A087WV96 503 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 CHRM1P11229 460 aaPredicted RBP22.89■■□□□ 1.25
UPF3A-202ENST00000375299 ABCB4P21439 1286 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 CYP3A7P24462 503 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 MAPK7Q13164 816 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 CLUL1Q15846 466 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 TRAPPC3LQ5T215 181 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 FAM182BQ5T319 152 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 FBXO25Q8TCJ0 367 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 FAM163AQ96GL9 167 aaPredicted RBP22.89■■□□□ 1.25
UPF3A-202ENST00000375299 ANO3Q9BYT9 981 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 CCDC134Q9H6E4 229 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 INTS9Q9NV88 658 aaKnown RBP22.89■■□□□ 1.25
UPF3A-202ENST00000375299 PCDHB13Q9Y5F0 798 aa22.89■■□□□ 1.25
UPF3A-202ENST00000375299 TAF1LQ8IZX4 1826 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L15C9J2P7 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L13C9JLJ4 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L11C9JVI0 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L18D6R9N7 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L22D6RA61 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L17D6RBQ6 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L19D6RCP7 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L20D6RJB6 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 MEIS1O00470 390 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 CLIC2O15247 247 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 AGTP01019 485 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 GABPAQ06546 454 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 SPIRE1Q08AE8 756 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L24Q0WX57 530 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 ZNF211Q13398 564 aaPredicted RBP22.88■■□□□ 1.25
UPF3A-202ENST00000375299 USP17L6PQ6QN14 398 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 COL23A1Q86Y22 540 aaPredicted RBP22.88■■□□□ 1.25
UPF3A-202ENST00000375299 ERMNQ8TAM6 284 aa22.88■■□□□ 1.25
UPF3A-202ENST00000375299 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.88■■□□□ 1.25
UPF3A-202ENST00000375299 SCP2P22307 547 aa22.87■■□□□ 1.25
UPF3A-202ENST00000375299 ADCY2Q08462 1091 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms