RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 THOC5Q13769 683 aaKnown RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 ARMCX2Q7L311 632 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 ZBTB33Q86T24 672 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 MYLK4Q86YV6 388 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 DCAF4Q8WV16 495 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 RAD54LQ92698 747 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 TRIM55Q9BYV6 548 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 SAYSD1Q9NPB0 183 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 MINPP1Q9UNW1 487 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 ANGPTL3Q9Y5C1 460 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 CDHR2Q9BYE9 1310 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L5A8MUK1 530 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 GSG1L2A8MUP6 293 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 RAD17O75943 681 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 PRR29P0C7W0 189 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 ARL4CP56559 192 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 CAV1Q03135 178 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 COASYQ13057 564 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 KNOP1Q1ED39 458 aaKnown RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 ZNF667Q5HYK9 610 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 RSPH3Q86UC2 560 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 SLC16A10Q8TF71 515 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 SKA2Q8WVK7 121 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 NCAPGQ9BPX3 1015 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 BEGAINQ9BUH8 593 aa12.25□□□□□ -0.45
PTPRF-203ENST00000372407 TSPYL2Q9H2G4 693 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 NOP53Q9NZM5 478 aaKnown RBP12.25□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L15C9J2P7 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 RASA4BC9J798 803 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L13C9JLJ4 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L11C9JVI0 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L18D6R9N7 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L22D6RA61 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L17D6RBQ6 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L19D6RCP7 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L20D6RJB6 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 RASA4O43374 803 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 KCNJ6P48051 423 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 GCLMP48507 274 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 GFPT1Q06210 699 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L24Q0WX57 530 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 IQCB1Q15051 598 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 SLC15A2Q16348 729 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 TMCO4Q5TGY1 634 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 USP17L6PQ6QN14 398 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 SYT2Q8N9I0 419 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 SERPINI1Q99574 410 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 RPF1Q9H9Y2 349 aaKnown RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 SEL1LQ9UBV2 794 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 ANGPTL2Q9UKU9 493 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 ADAMTSL3P82987 1691 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 TTI1O43156 1089 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 MAP3K7O43318 606 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 S100BP04271 92 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 PLS3P13797 630 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 METTL23Q86XA0 190 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 BANK1Q8NDB2 785 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 HEXIM2Q96MH2 286 aaKnown RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 DDX47Q9H0S4 455 aaKnown RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 PSMA2P25787 234 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 MAGOHP61326 146 aaKnown RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 TRIM28Q13263 835 aaKnown RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 ART3Q13508 389 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 PPP1R18Q6NYC8 613 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 NFRKBQ6P4R8 1299 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 MAML1Q92585 1016 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 SLC12A6Q9UHW9 1150 aa12.24□□□□□ -0.45
PTPRF-203ENST00000372407 CPSF3Q9UKF6 684 aaKnown RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 MORC2Q9Y6X9 1032 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-203ENST00000372407 GMNCA6NCL1 334 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 SRGAP2CP0DJJ0 459 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 JAK3P52333 1124 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ATP2C1P98194 919 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 KRT80Q6KB66 452 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 PADI6Q6TGC4 694 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 DHX40Q8IX18 779 aaKnown RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 SIX6OS1Q8N1H7 587 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 COG1Q8WTW3 980 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 VPS39Q96JC1 886 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 BARHL2Q9NY43 387 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 PACSIN2Q9UNF0 486 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ARHGEF37A1IGU5 675 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 C21orf2O43822 256 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 DNAJC8O75937 253 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ATP5HO75947 161 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 KRT38O76015 456 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 NCF2P19878 526 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 GRM4Q14833 912 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 SCARA5Q6ZMJ2 495 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 CRLF3Q8IUI8 442 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 SRRM1Q8IYB3 904 aaKnown RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 SLC44A5Q8NCS7 719 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ZNF526Q8TF50 670 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 MRFAP1Q9Y605 127 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ESYT3A0FGR9 886 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 POTEB3A0JP26 581 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 GRID2IPA4D2P6 1211 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 POTECB2RU33 542 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms