RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 RESP18Q5W5W9 173 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 GPR20Q99678 358 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 PPP1R12CQ9BZL4 782 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 UBE2OQ9C0C9 1292 aaKnown RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 GZF1Q9H116 711 aaPredicted RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 METTL14Q9HCE5 456 aaKnown RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 DDX60LQ5H9U9 1706 aaKnown RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 A0A1W2PQ45 241 aaPredicted RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 A0A1W2PQY0 241 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 TRAPPC3O43617 180 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 RPN1P04843 607 aaKnown RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 MLLT1Q03111 559 aaPredicted RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 SMC1AQ14683 1233 aaKnown RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 MTHFD1LQ6UB35 978 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 GLB1LQ6UWU2 654 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 PCDHA7Q9UN72 937 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 PHF24Q9UPV7 400 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 ANKRD62A6NC57 917 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 FGBP02675 491 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 FDPSP14324 419 aaKnown RBP10.09□□□□□ -0.79
UPF2-202ENST00000357604 CREMQ03060 361 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 KRBA2Q6ZNG9 492 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 PPP1R16BQ96T49 567 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 DPP7Q9UHL4 492 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 NUB1Q9Y5A7 615 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 PVALEFA0A1B0GWK0 134 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 NAMPTP43490 491 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 CD302Q8IX05 232 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 MLKLQ8NB16 471 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PIGOQ8TEQ8 1089 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 CCSER1Q9C0I3 900 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 SETD4Q9NVD3 440 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 INSRRP14616 1297 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PEX3P56589 373 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 ZNF568Q3ZCX4 644 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PDXDC1Q6P996 788 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 RNF149Q8NC42 400 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 MORC4Q8TE76 937 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 YME1L1Q96TA2 773 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 CHST12Q9NRB3 414 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 RCOR1Q9UKL0 485 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PCDHB12Q9Y5F1 795 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 HIP1RO75146 1068 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 MCM4P33991 863 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PAK1Q13153 545 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 MCM6Q14566 821 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 SPECC1Q5M775 1068 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 CEP135Q66GS9 1140 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 UNC13DQ70J99 1090 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 MICAL1Q8TDZ2 1067 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 FAM217BQ9NTX9 383 aaPredicted RBP10.08□□□□□ -0.8
UPF2-202ENST00000357604 IGSF9BQ9UPX0 1349 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 SLFN14P0C7P3 912 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 KLRC1P26715 233 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PLCB4Q15147 1175 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 GOLGA1Q92805 767 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 CLSTN2Q9H4D0 955 aa10.08□□□□□ -0.8
UPF2-202ENST00000357604 PPP1R11O60927 126 aaPredicted RBP10.07□□□□□ -0.8
UPF2-202ENST00000357604 IL18RAPO95256 599 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 TAL1P17542 331 aaPredicted RBP10.07□□□□□ -0.8
UPF2-202ENST00000357604 CACNA2D4Q7Z3S7 1137 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 GCNAQ96QF7 691 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 TSPAN18Q96SJ8 248 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 COLEC11Q9BWP8 271 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 PDGFCQ9NRA1 345 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 ADAMTSL1Q8N6G6 1762 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 SLC37A4O43826 429 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 KRT19P08727 400 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 TNNI1P19237 187 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 CST5P28325 142 aaPredicted RBP10.07□□□□□ -0.8
UPF2-202ENST00000357604 PTPROQ16827 1216 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 FAM200AQ8TCP9 573 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 ZIC5Q96T25 663 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 CEP83Q9Y592 693 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 SLC4A7Q9Y6M7 1214 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 POTEFA5A3E0 1075 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 FAM86B1E9PN63 330 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 CLDN3O15551 220 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 FAM86B2P0C5J1 330 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 ZNF865P0CJ78 1059 aaPredicted RBP10.07□□□□□ -0.8
UPF2-202ENST00000357604 RAD51AP2Q09MP3 1159 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 POTEGQ6S5H5 508 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 POTEEQ6S8J3 1075 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 CTNND2Q9UQB3 1225 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 RBM47A0AV96 593 aaKnown RBP10.07□□□□□ -0.8
UPF2-202ENST00000357604 CRYBB1P53674 252 aaPredicted RBP10.07□□□□□ -0.8
UPF2-202ENST00000357604 TNNC1P63316 161 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 LRRC8DQ7L1W4 858 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 DEFB128Q7Z7B8 93 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 ZBTB33Q86T24 672 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 TTC39CQ8N584 583 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 ZNF333Q96JL9 665 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 ACAP3Q96P50 834 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 GSDMAQ96QA5 445 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 KCNMB3Q9NPA1 279 aa10.07□□□□□ -0.8
UPF2-202ENST00000357604 MAPTP10636 758 aaKnown RBP10.06□□□□□ -0.8
UPF2-202ENST00000357604 RFX1P22670 979 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 PAX3P23760 479 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 IQCDQ96DY2 449 aa10.06□□□□□ -0.8
UPF2-202ENST00000357604 ZNF560Q96MR9 790 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms