RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ACTN2P35609 894 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MARSP56192 900 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 CCNA1P78396 465 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 CCDC40Q4G0X9 1142 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ODR4Q5SWX8 454 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MIS18BP1Q6P0N0 1132 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 SEPT14Q6ZU15 432 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ZNF720Q7Z2F6 126 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 RETREG2Q8NC44 543 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 IQCDQ96DY2 449 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 MS4A4AQ96JQ5 239 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 RPGRIP1Q96KN7 1286 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 ERGIC2Q96RQ1 377 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 NDST4Q9H3R1 872 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 POLD4Q9HCU8 107 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 LARSQ9P2J5 1176 aaKnown RBP14.06□□□□□ -0.16
CLK3-201ENST00000345005 GABBR1Q9UBS5 961 aa14.06□□□□□ -0.16
CLK3-201ENST00000345005 PLXNB2O15031 1838 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 CCL15-CCL14A0A0B4J2E2 113 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 LOC102724159A0A0B4J2E5 919 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 CTAGE15A4D2H0 777 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 PDHXO00330 501 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 CELF2O95319 508 aaKnown RBP14.05□□□□□ -0.16
CLK3-201ENST00000345005 CTAGE8P0CG41 777 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 ACTR2P61160 394 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 MAPK7Q13164 816 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 ALCAMQ13740 583 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 PWP2Q15269 919 aaKnown RBP14.05□□□□□ -0.16
CLK3-201ENST00000345005 CCL15Q16663 113 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 MAP9Q49MG5 647 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 XKR9Q5GH70 373 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 BEND6Q5SZJ8 279 aaPredicted RBP14.05□□□□□ -0.16
CLK3-201ENST00000345005 ABHD15Q6UXT9 468 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 CYP26C1Q6V0L0 522 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 CTAGE6Q86UF2 777 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 CTAGE4Q8IX94 777 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 NAPGQ99747 312 aaPredicted RBP14.05□□□□□ -0.16
CLK3-201ENST00000345005 VIPAS39Q9H9C1 493 aa14.05□□□□□ -0.16
CLK3-201ENST00000345005 DNAJC25-GNG10A0A024R161 153 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 NMT1P30419 496 aaKnown RBP14.04□□□□□ -0.16
CLK3-201ENST00000345005 GCLCP48506 637 aaPredicted RBP14.04□□□□□ -0.16
CLK3-201ENST00000345005 SP2Q02086 613 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 FSTL1Q12841 308 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 SWSAP1Q6NVH7 229 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 KCNV1Q6PIU1 500 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 ANKRD23Q86SG2 305 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 DAW1Q8N136 415 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 GOLGA6L1Q8N7Z2 621 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 GPRC5AQ8NFJ5 357 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 FAM71BQ8TC56 605 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 SMCR8Q8TEV9 937 aaPredicted RBP14.04□□□□□ -0.16
CLK3-201ENST00000345005 DRC1Q96MC2 740 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 GEMIN8Q9NWZ8 242 aaKnown RBP14.04□□□□□ -0.16
CLK3-201ENST00000345005 BTBD19C9JJ37 291 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 USO1O60763 962 aaKnown RBP14.04□□□□□ -0.16
CLK3-201ENST00000345005 ATG7O95352 703 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 SUPT20HL2P0C7V6 817 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 ZBTB48P10074 688 aaPredicted RBP14.04□□□□□ -0.16
CLK3-201ENST00000345005 CYP2C8P10632 490 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 NR2F2P24468 414 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 FXR1P51114 621 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLK3-201ENST00000345005 NEDD9Q14511 834 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 NFIL3Q16649 462 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 WDR78Q5VTH9 848 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 CYFIP1Q7L576 1253 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 SLC17A8Q8NDX2 589 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 FIZ1Q96SL8 496 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 BCAS3Q9H6U6 928 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 FAM184BQ9ULE4 1060 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 CAPN11Q9UMQ6 739 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 L1RE1Q9UN81 338 aa14.04□□□□□ -0.16
CLK3-201ENST00000345005 BACH1O14867 736 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 PGK2P07205 417 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 PLS3P13797 630 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 KRT9P35527 623 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 FIGNQ5HY92 759 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 ZNF569Q5MCW4 686 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 SPRYD7Q5W111 196 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 WDR93Q6P2C0 686 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 ANO5Q75V66 913 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 FRMD5Q7Z6J6 570 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 EHBP1Q8NDI1 1231 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 PCMTD1Q96MG8 357 aaPredicted RBP14.03□□□□□ -0.16
CLK3-201ENST00000345005 RASSF4Q9H2L5 321 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 R3HDMLQ9H3Y0 253 aa14.03□□□□□ -0.16
CLK3-201ENST00000345005 LUC7L2Q9Y383 392 aaKnown RBP14.03□□□□□ -0.16
CLK3-201ENST00000345005 ZNF862O60290 1169 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 STBD1O95210 358 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 NR3C1P04150 777 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 NPEPPSP55786 919 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 SP4Q02446 784 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 TSR1Q2NL82 804 aaKnown RBP14.02□□□□□ -0.16
CLK3-201ENST00000345005 ZC2HC1CQ53FD0 456 aaPredicted RBP14.02□□□□□ -0.16
CLK3-201ENST00000345005 MAEAQ7L5Y9 396 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 HS2ST1Q7LGA3 356 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 TRIM59Q8IWR1 403 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 OR8K1Q8NGG5 319 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 BRI3BPQ8WY22 251 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 STRA6Q9BX79 667 aa14.02□□□□□ -0.16
CLK3-201ENST00000345005 METTL14Q9HCE5 456 aaKnown RBP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 265.9 ms