RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 GUCY2FP51841 1108 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CUL3Q13618 768 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SAFBQ15424 915 aaKnown RBP eCLIP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ASTE1Q2TB18 679 aaPredicted RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SLC4A8Q2Y0W8 1093 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 TNFAIP8L3Q5GJ75 292 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 TRPM8Q7Z2W7 1104 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 KRT26Q7Z3Y9 468 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 KIFAP3Q92845 792 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 INPP4AQ96PE3 977 aaPredicted RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 RPS6KC1Q96S38 1066 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CSRNP1Q96S65 589 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 TAB2Q9NYJ8 693 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ABCF2Q9UG63 623 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 RWDD2AQ9UIY3 292 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 WDR19Q8NEZ3 1342 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 KLF18A0A0U1RQI7 1052 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 IGF2BP3O00425 579 aaKnown RBP eCLIP6.09□□□□□ -1.433e-6■■■□□ 19.1
CSDE1-202ENST00000339438 PJA2O43164 708 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SART1O43290 800 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 ENTPD3O75355 529 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 UBOX5O94941 541 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 HEXIM1O94992 359 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 KIF4AO95239 1232 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SHBGP04278 402 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 PMS1P54277 932 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 GUCY2DQ02846 1103 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 C8orf74Q6P047 294 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 RAB11FIP4Q86YS3 637 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 IFT20Q8IY31 132 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 SEC14L1Q92503 715 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 GSDMAQ96QA5 445 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 XPO6Q96QU8 1125 aaKnown RBP6.09□□□□□ -1.43
CSDE1-202ENST00000339438 RUFY1Q96T51 708 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CSRNP2Q9H175 543 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 TMEM165Q9HC07 324 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 PREBQ9HCU5 417 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 LRWD1Q9UFC0 647 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 CEP131Q9UPN4 1083 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 PCDHB6Q9Y5E3 794 aa6.09□□□□□ -1.43
CSDE1-202ENST00000339438 MACROD2A1Z1Q3 448 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 GSG1L2A8MUP6 293 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 KCNJ18B7U540 433 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 WNT7AO00755 349 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 PEX11AO75192 247 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 UFL1O94874 794 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 MOCS3O95396 460 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 MMP13P45452 471 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 CRKP46108 304 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 KRT83P78385 493 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 MRPS35P82673 323 aaKnown RBP6.09□□□□□ -1.44
CSDE1-202ENST00000339438 KCNJ12Q14500 433 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 IFI16Q16666 785 aaKnown RBP6.09□□□□□ -1.44
CSDE1-202ENST00000339438 DOK7Q18PE1 504 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 MAP3K21Q5TCX8 1036 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 ARHGAP27Q6ZUM4 889 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 EXOC3L1Q86VI1 746 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 ENDOVQ8N8Q3 282 aaKnown RBP6.09□□□□□ -1.44
CSDE1-202ENST00000339438 CAGE1Q8TC20 777 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 MORC4Q8TE76 937 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 VPS54Q9P1Q0 977 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 ARHGAP20Q9P2F6 1191 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 PRKAG3Q9UGI9 489 aa6.09□□□□□ -1.44
CSDE1-202ENST00000339438 KMT2EQ8IZD2 1858 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 LGALS16A8MUM7 142 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 LGR5O75473 907 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 TPBGLP0DKB5 382 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 MSH2P43246 934 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 MGAT5Q09328 741 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 ARFGAP2Q8N6H7 521 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 SPATA5Q8NB90 893 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 CCDC197Q8NCU1 140 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 UCMAQ8WVF2 138 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 CRYGNQ8WXF5 182 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 RPGRQ92834 1020 aaKnown RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 ALG1Q9BT22 464 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 ISCUQ9H1K1 167 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 TRIM33Q9UPN9 1127 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 CTNND2Q9UQB3 1225 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 GOLGA8BA8MQT2 603 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 RAD51CO43502 376 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 ATP6V1G1O75348 118 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 ACADSP16219 412 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 TCP1P17987 556 aaKnown RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 MATR3P43243 847 aaKnown RBP eCLIP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 PLOD1Q02809 727 aaPredicted RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 RRP12Q5JTH9 1297 aaKnown RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 KLHL10Q6JEL2 608 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 C17orf99Q6UX52 265 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 NOSTRINQ8IVI9 506 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.08□□□□□ -1.441e-7■■■■□ 24.2
CSDE1-202ENST00000339438 EPSTI1Q96J88 318 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 TRAPPC9Q96Q05 1148 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 HAPLN3Q96S86 360 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 IL17RBQ9NRM6 502 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 HYOU1Q9Y4L1 999 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 ZNF536O15090 1300 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 DENND4CQ5VZ89 1909 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 RFC5P40937 340 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms