RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 KNOP1Q1ED39 458 aaKnown RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 MUM1L1Q5H9M0 696 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 ADAM22Q9P0K1 906 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 JRKLQ9Y4A0 524 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 PHLPP2Q6ZVD8 1323 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 HIP1RO75146 1068 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 COG7P83436 770 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 FAM71BQ8TC56 605 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 CNOT8Q9UFF9 292 aaKnown RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 SMIM24O75264 130 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 ZBED1O96006 694 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 S100BP04271 92 aaPredicted RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 EPHB1P54762 984 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 IFT88Q13099 833 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 NEXMIFQ5QGS0 1516 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 GANCQ8TET4 914 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 CACYBPQ9HB71 228 aaKnown RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 FAM217BQ9NTX9 383 aaPredicted RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 SPATA31A1Q5TZJ5 1347 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 ADORA2BP29275 332 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 NMT1P30419 496 aaKnown RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 SERPINB6P35237 376 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 GYS2P54840 703 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 TTLL4Q14679 1199 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 CDC42EP5Q6NZY7 148 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 XXYLT1Q8NBI6 393 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 CDC26Q8NHZ8 85 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 FAF2Q96CS3 445 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 DIP2AQ14689 1571 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 PSMD14O00487 310 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 DHX40Q8IX18 779 aaKnown RBP10.92□□□□□ -0.66
CHD3-201ENST00000330494 AFG1LQ8WV93 481 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 PBKQ96KB5 322 aa10.92□□□□□ -0.66
CHD3-201ENST00000330494 ARMCX2Q7L311 632 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 CFAP61Q8NHU2 1237 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 TAF6LQ9Y6J9 622 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 ABCA9Q8IUA7 1624 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 RIMS1Q86UR5 1692 aaKnown RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 PFDN6O15212 129 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 PHKA2P46019 1235 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 FAM133BQ5BKY9 247 aaKnown RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 C11orf70Q9BRQ4 267 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 IFT122Q9HBG6 1241 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 NOVA2Q9UNW9 492 aaKnown RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 SETBP1Q9Y6X0 1596 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 PPP4R3CPQ6ZMV5 832 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 BBS5Q8N3I7 341 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 RNF25Q96BH1 459 aaPredicted RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 TMEM39BQ9GZU3 492 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 IRAK4Q9NWZ3 460 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 A6NNZ2 444 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 HDLBPQ00341 1268 aaKnown RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 TUBB8Q3ZCM7 444 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 SYCP2LQ5T4T6 812 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 OSBPL5Q9H0X9 879 aaPredicted RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 HDAC6Q9UBN7 1215 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 OPHN1O60890 802 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 EPHB4P54760 987 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 ANGEL2Q5VTE6 544 aaKnown RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 PSPC1Q8WXF1 523 aaKnown RBP10.91□□□□□ -0.66
CHD3-201ENST00000330494 ACAD9Q9H845 621 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 PPME1Q9Y570 386 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 ATP8B3O60423 1300 aa10.91□□□□□ -0.66
CHD3-201ENST00000330494 P4HBP07237 508 aaKnown RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 SOX5P35711 763 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 RASSF2P50749 326 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 SURF1Q15526 300 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 E2F4Q16254 413 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 TMEM143Q96AN5 459 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 EXOC1LA0A1B0GW35 172 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 LGALS16A8MUM7 142 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 M0QYV0 167 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 STK25O00506 426 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 MAP7Q14244 749 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 DRAP1Q14919 205 aaPredicted RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 SLMAPQ14BN4 828 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 PCGF5Q86SE9 256 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 RAB3IPQ96QF0 476 aaPredicted RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 UBE4BO95155 1302 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 LDHAP00338 332 aaKnown RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 IL9RQ01113 521 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 IQCB1Q15051 598 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 RUNDC3BQ96NL0 473 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 FMO2Q99518 471 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 NUP85Q9BW27 656 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 EPC1Q9H2F5 836 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 OLA1Q9NTK5 396 aaKnown RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 TBC1D22BQ9NU19 505 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 USP27XA6NNY8 438 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 YWHABP31946 246 aaKnown RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 HABP4Q5JVS0 413 aaKnown RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 GIMAP8Q8ND71 665 aaPredicted RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 KLHL11Q9NVR0 708 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 ZDHHC9Q9Y397 364 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 RRP15Q9Y3B9 282 aaKnown RBP10.9□□□□□ -0.66
CHD3-201ENST00000330494 ZBBXA8MT70 800 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 SNCBQ16143 134 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 SPOPLQ6IQ16 392 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 SAMD7Q7Z3H4 446 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 MCPH1Q8NEM0 835 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms