RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 ZNF572Q7Z3I7 529 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 MGARPQ8TDB4 240 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 GLG1Q92896 1179 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 TMBIM4Q9HC24 238 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 CHORDC1Q9UHD1 332 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 ROBO3Q96MS0 1386 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 PDXKO00764 312 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 BUB1BO60566 1050 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 ALAS1P13196 640 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 TNFRSF8P28908 595 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 HSPA9P38646 679 aaKnown RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 MAP2K1Q02750 393 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 ACTN3Q08043 901 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 MKRN4PQ13434 485 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 BIRC3Q13489 604 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 GIT2Q14161 759 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 PNMA8AQ86V59 439 aaPredicted RBP11.4□□□□□ -0.58
COL3A1-202ENST00000317840 SLC35G2Q8TBE7 412 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 CCDC17Q96LX7 622 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 GANQ9H2C0 597 aa11.4□□□□□ -0.58
COL3A1-202ENST00000317840 PPP1R7Q15435 360 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 IKZF4Q9H2S9 585 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 KCTD10Q9H3F6 313 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 PCIF1Q9H4Z3 704 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 SAMD15Q9P1V8 674 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.39□□□□□ -0.59
COL3A1-202ENST00000317840 GAS7O60861 476 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 SSR1P43307 286 aaKnown RBP11.39□□□□□ -0.59
COL3A1-202ENST00000317840 ZNF844Q08AG5 666 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 E2F5Q15329 346 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 ZNF746Q6NUN9 644 aaPredicted RBP11.39□□□□□ -0.59
COL3A1-202ENST00000317840 IRF2BP2Q7Z5L9 587 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 UBL4BQ8N7F7 174 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 CYP2W1Q8TAV3 490 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 PLCB1Q9NQ66 1216 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.39□□□□□ -0.59
COL3A1-202ENST00000317840 ITGB4P16144 1822 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 FLT3P36888 993 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 ITGB3BPQ13352 177 aaPredicted RBP11.39□□□□□ -0.59
COL3A1-202ENST00000317840 SEL1L2Q5TEA6 688 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 LRCH2Q5VUJ6 765 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 HOOK2Q96ED9 719 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 PSMD1Q99460 953 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 RUSC1Q9BVN2 902 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 BAIAP2L1Q9UHR4 511 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 PAPPAQ13219 1627 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 PITPNM2Q9BZ72 1349 aa11.39□□□□□ -0.59
COL3A1-202ENST00000317840 ARHGEF35A5YM69 484 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 BMP3P12645 472 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 IL1R1P14778 569 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 ARSHQ5FYA8 562 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 NEK9Q8TD19 979 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 ACTRT1Q8TDG2 376 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 CALR3Q96L12 384 aaKnown RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 SLITRK6Q9H5Y7 841 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 ZNF408Q9H9D4 720 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 PARVGQ9HBI0 331 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 KCNK9Q9NPC2 374 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 PNMA2Q9UL42 364 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 DDX60Q8IY21 1712 aaKnown RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 GSTTP1A0A1W2PQM5 241 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 RPA1P27694 616 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 NF2P35240 595 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 MYL7Q01449 175 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 CALCOCO2Q13137 446 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 RBM46Q8TBY0 533 aaKnown RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 EIF2AK1Q9BQI3 630 aaKnown RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 TMEM39BQ9GZU3 492 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 BCAS3Q9H6U6 928 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 PIM2Q9P1W9 311 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 LRP5O75197 1615 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 DDX3XO00571 662 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 BCRP11274 1271 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 SOX5P35711 763 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 DALRD3Q5D0E6 543 aaKnown RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 STRIP1Q5VSL9 837 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 POTEAQ6S8J7 498 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 CCDC13Q8IYE1 715 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 RFFLQ8WZ73 363 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 SLC35C1Q96A29 364 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 MYCBPQ99417 103 aaPredicted RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 NEUROG2Q9H2A3 272 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 UBE2TQ9NPD8 197 aaPredicted RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 INTS9Q9NV88 658 aaKnown RBP11.38□□□□□ -0.59
COL3A1-202ENST00000317840 CD2APQ9Y5K6 639 aa11.38□□□□□ -0.59
COL3A1-202ENST00000317840 CCDC169A6NNP5 214 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 SLC12A3P55017 1021 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 LRIG3Q6UXM1 1119 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 MREGQ8N565 214 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 SYT2Q8N9I0 419 aaPredicted RBP11.37□□□□□ -0.59
COL3A1-202ENST00000317840 CD248Q9HCU0 757 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 KLC4Q9NSK0 619 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 MTUS1Q9ULD2 1270 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 DOCK2Q92608 1830 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 FOSP01100 380 aaPredicted RBP11.37□□□□□ -0.59
COL3A1-202ENST00000317840 VPS41P49754 854 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 AP3B2Q13367 1082 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.37□□□□□ -0.598e-7■■■■■ 32.1
COL3A1-202ENST00000317840 SNED1Q8TER0 1413 aa11.37□□□□□ -0.59
COL3A1-202ENST00000317840 MMEP08473 750 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms