RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 P3H4Q92791 437 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 AGBL1Q96MI9 1066 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 TTC1Q99614 292 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 DNAJC12Q9UKB3 198 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 AOX1Q06278 1338 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 OPHN1O60890 802 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 PPFIA4O75335 1185 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 GGPS1O95749 300 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 KIF23Q02241 960 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 MFSD4BQ5TF39 518 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 BTBD8Q5XKL5 378 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 LRRC8CQ8TDW0 803 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 STRBPQ96SI9 672 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 PACSIN2Q9UNF0 486 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 CTTNBP2Q8WZ74 1663 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 IGKV5-2P06315 115 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 CDC27P30260 824 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 NMT1P30419 496 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 EIF4A3P38919 411 aaKnown RBP8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ARL4DP49703 201 aa8.37□□□□□ -1.07
SCN9A-201ENST00000303354 ANP32DO95626 131 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 YY1P25490 414 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 THPOP40225 353 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 UBE4BO95155 1302 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 E5RI56 91 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 SNAPC2Q13487 334 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 COBLL1Q53SF7 1204 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 CDC42EP5Q6NZY7 148 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 RSBN1LQ6PCB5 846 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 CEP128Q6ZU80 1094 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 DCAF4Q8WV16 495 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 NHEJ1Q9H9Q4 299 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 FAM135BQ49AJ0 1406 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 SPECC1L-ADORA2AF8WAN1 911 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 TBCCQ15814 346 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 KIAA1755Q5JYT7 1200 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 SMAD5Q99717 465 aaKnown RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 EGFL8Q99944 293 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 FAM118BQ9BPY3 351 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 LXNQ9BS40 222 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 RNF26Q9BY78 433 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 EFCAB6Q5THR3 1501 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 ERFP50548 548 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 RFX8Q6ZV50 586 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 FOXP1Q9H334 677 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 DHX35Q9H5Z1 703 aaKnown RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 MLXIPLQ9NP71 852 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 ANAPC7Q9UJX3 599 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 ATP10DQ9P241 1426 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 CSDE1O75534 798 aaKnown RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 USP6P35125 1406 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 H7C1W4 665 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 IMPG1Q17R60 797 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 EIF2AK1Q9BQI3 630 aaKnown RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 CHORDC1Q9UHD1 332 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 SULT1E1P49888 294 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 TRIM58Q8NG06 486 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 MUC3BQ9H195 1237 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 DCP1AQ9NPI6 582 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-201ENST00000303354 AGAP1Q9UPQ3 857 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 UTYO14607 1347 aa8.36□□□□□ -1.07
SCN9A-201ENST00000303354 PRPF3O43395 683 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 KLRK1P26718 216 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 COG7P83436 770 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 FAM133BQ5BKY9 247 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SP8Q8IXZ3 490 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SLC25A41Q8N5S1 370 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 CXorf38Q8TB03 319 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 CPB2Q96IY4 423 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 DEFB129Q9H1M3 183 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 VPS11Q9H270 941 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 GTSE1Q9NYZ3 720 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SLC9A2Q9UBY0 812 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SNX9Q9Y5X1 595 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SNX2O60749 519 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 HIP1RO75146 1068 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 TRIM49P0CI25 452 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 TRIM49CP0CI26 452 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 GUCY1A2P33402 732 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 VEPH1Q14D04 833 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 FBXO18Q8NFZ0 1043 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 PPWD1Q96BP3 646 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ACAP3Q96P50 834 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 CASS4Q9NQ75 786 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 STAT5BP51692 787 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 GFPT1Q06210 699 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ZC3H18Q86VM9 953 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 CACNA2D3Q8IZS8 1091 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 AKT1S1Q96B36 256 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 VCX3BQ9H321 246 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 FGFR4P22455 802 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ZNF280CQ8ND82 737 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 IPO5O00410 1097 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ACSL3O95573 720 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 PBLDP30039 288 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 COL23A1Q86Y22 540 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SLC30A5Q8TAD4 765 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 RAPGEF5Q92565 580 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 NR1H4Q96RI1 486 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms