RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 CTSWP56202 376 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 Q3C1V9 767 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 SLFN12LQ6IEE8 588 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 BTNL9Q6UXG8 535 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TSSK1BQ9BXA7 367 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ASCC2Q9H1I8 757 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 MRGBPQ9NV56 204 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FARP1Q9Y4F1 1045 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 LRRC63Q05C16 580 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 PSMD2Q13200 908 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TBC1D9BQ66K14 1250 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 OR6B2Q6IFH4 312 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FOXP1Q9H334 677 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 RPF1Q9H9Y2 349 aaKnown RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FBXO2Q9UK22 296 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 LZTS1Q9Y250 596 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 MIF4GDA9UHW6 222 aaKnown RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 VAMP4O75379 141 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 SUPT3HO75486 399 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 NDUFA8P51970 172 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 DDIASQ8IXT1 998 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 LRRC47Q8N1G4 583 aaKnown RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.29□□□□□ -0.922e-8■■■■■ 72.2
NIPBL-201ENST00000282516 NHEJ1Q9H9Q4 299 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 PARVGQ9HBI0 331 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 USE1Q9NZ43 259 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 PCDHA5Q9Y5H7 936 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 GUCA1CO95843 209 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FTCDO95954 541 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FAM173BQ6P4H8 233 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 SARM1Q6SZW1 724 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 SULF1Q8IWU6 871 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 YIPF3Q9GZM5 350 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ZFYVE1Q9HBF4 777 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 COBLO75128 1261 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TIMM10P62072 90 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 LAMC2Q13753 1193 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 RINLQ6ZS11 566 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF594Q96JF6 807 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FAM161BQ96MY7 647 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 POLR3EQ9NVU0 708 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 NFU1Q9UMS0 254 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TNKSO95271 1327 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 CCDC22O60826 627 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TTC23LQ6PF05 361 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 FAM129AQ9BZQ8 928 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ECT2Q9H8V3 914 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 BNIP3LO60238 219 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 RASSF9O75901 435 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 CXCR5P32302 372 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ZBED6P86452 979 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 IDI1Q13907 227 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 CASP8Q14790 479 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF790Q6PG37 636 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 PCDHA4Q9UN74 947 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 PRAG1Q86YV5 1406 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ST13P50502 369 aaKnown RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 SLFN13Q68D06 897 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TOGARAM2Q6ZUX3 1019 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 THAP11Q96EK4 314 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ACAP3Q96P50 834 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 TRIM62Q9BVG3 475 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 NXF1Q9UBU9 619 aaKnown RBP9.29□□□□□ -0.92
NIPBL-201ENST00000282516 CLCA2Q9UQC9 943 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 ZMYM3Q14202 1370 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 EIF2S1P05198 315 aaKnown RBP9.28□□□□□ -0.92
NIPBL-201ENST00000282516 DTX3LQ8TDB6 740 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 TMEM161AQ9NX61 479 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 RBL2Q08999 1139 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 TRIP4Q15650 581 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-201ENST00000282516 MEI1Q5TIA1 1274 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 CYGBQ8WWM9 190 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 SYNDIG1LA6NDD5 238 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 OSBPP22059 807 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 ARPP19P56211 112 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF658Q5TYW1 1059 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-201ENST00000282516 PARP9Q8IXQ6 854 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 MSTO1Q9BUK6 570 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 TMEM63CQ9P1W3 806 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 UVRAGQ9P2Y5 699 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 ARHGEF10O15013 1369 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 CTIFO43310 598 aaKnown RBP9.28□□□□□ -0.92
NIPBL-201ENST00000282516 CNGA2Q16280 664 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 SCARA5Q6ZMJ2 495 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 HMGXB3Q12766 1538 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 TTLL1O95922 423 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 CD58P19256 250 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 HPCAP84074 193 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 BEND6Q5SZJ8 279 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-201ENST00000282516 POTEAQ6S8J7 498 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 NLRP9Q7RTR0 991 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 TTC30AQ86WT1 665 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 SLC7A5P2Q9GIP4 190 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 TMEM191CA6NGB0 347 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 FAM107AO95990 144 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 NAALADL2Q58DX5 795 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 THEMIS2Q5TEJ8 643 aa9.28□□□□□ -0.92
NIPBL-201ENST00000282516 DPY19L2Q6NUT2 758 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms