RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 BAP1Q92560 729 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 ACCSQ96QU6 501 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 HAUS4Q9H6D7 363 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 WDR81Q562E7 1941 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 GTPBP10A4D1E9 387 aaKnown RBP16.76■□□□□ 0.27
SF3B4-201ENST00000271628 CNMDO75829 334 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 TGFB3P10600 412 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 GTF2BQ00403 316 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 SNAPC2Q13487 334 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 FAM133AQ8N9E0 248 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 KIFAP3Q92845 792 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 SLC10A4Q96EP9 437 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 CEP170P1Q96L14 293 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 PLCB1Q9NQ66 1216 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 FHOD1Q9Y613 1164 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 LRRC53A6NM62 1247 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 DGAT1O75907 488 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 ZRANB2O95218 330 aaKnown RBP eCLIP16.76■□□□□ 0.27
SF3B4-201ENST00000271628 ATG7O95352 703 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 CASP4P49662 377 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 NCKAP1LP55160 1127 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 NPEPPSP55786 919 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 MOGSQ13724 837 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 TERF2Q15554 542 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 DCAF17Q5H9S7 520 aaPredicted RBP16.76■□□□□ 0.27
SF3B4-201ENST00000271628 FAM102BQ5T8I3 360 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 TCERG1LQ5VWI1 586 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 PLA2G4FQ68DD2 849 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 SLC35C1Q96A29 364 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 BORCS6Q96GS4 357 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 LSM14BQ9BX40 385 aaKnown RBP16.76■□□□□ 0.27
SF3B4-201ENST00000271628 RBPJLQ9UBG7 517 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 KCNG1Q9UIX4 513 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 CLEC11AQ9Y240 323 aa16.76■□□□□ 0.27
SF3B4-201ENST00000271628 ZNF862O60290 1169 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 SUPT20HL2P0C7V6 817 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 TUBB2AQ13885 445 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 PPP2R5AQ15172 486 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 EXOC3L4Q17RC7 722 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 PDXDC1Q6P996 788 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 TRMT1LQ7Z2T5 733 aaKnown RBP16.75■□□□□ 0.27
SF3B4-201ENST00000271628 HAUS6Q7Z4H7 955 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 KSR1Q8IVT5 923 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 C12orf56Q8IXR9 622 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 MCPH1Q8NEM0 835 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 GTF3C2Q8WUA4 911 aaPredicted RBP16.75■□□□□ 0.27
SF3B4-201ENST00000271628 SH2D3AQ9BRG2 576 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 CRACR2AQ9BSW2 395 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 TUBB2BQ9BVA1 445 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 PNMA3Q9UL41 463 aa16.75■□□□□ 0.27
SF3B4-201ENST00000271628 TMEM150BA6NC51 233 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 SOWAHBA6NEL2 793 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 PEX10O60683 326 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 NOL4O94818 638 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 PEX3P56589 373 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 SP2Q02086 613 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 DMP1Q13316 513 aaPredicted RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 NEDD9Q14511 834 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 SPA17Q15506 151 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 XKR3Q5GH77 459 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 GBP6Q6ZN66 633 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 SEPT14Q6ZU15 432 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 CYFIP1Q7L576 1253 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 CCDC60Q8IWA6 550 aaPredicted RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 HVCN1Q96D96 273 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 NTPCRQ9BSD7 190 aaKnown RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 DEF6Q9H4E7 631 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 MROH8Q9H579 483 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 SSU72P8A0A1W2PR75 194 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 KRT86O43790 486 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 STBD1O95210 358 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 PNMA6AP0CW24 399 aaPredicted RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 ABCD1P33897 745 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 RTP1P59025 263 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 POLR2FP61218 127 aaKnown RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 SLC9C1Q4G0N8 1177 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 GPAT2Q6NUI2 795 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 KCNV1Q6PIU1 500 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 ARHGAP20Q9P2F6 1191 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 FBXL5Q9UKA1 691 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 ZHX1Q9UKY1 873 aaPredicted RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 EXOC7Q9UPT5 735 aa16.74■□□□□ 0.27
SF3B4-201ENST00000271628 REXO2Q9Y3B8 237 aaKnown RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 MAFBQ9Y5Q3 323 aaPredicted RBP16.74■□□□□ 0.27
SF3B4-201ENST00000271628 IGSF9BQ9UPX0 1349 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 EXOC3O60645 756 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 TUBB4BP68371 445 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 PRKCEQ02156 737 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 SP4Q02446 784 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 KCTD2Q14681 263 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 SFMBT2Q5VUG0 894 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 ZNF771Q7L3S4 317 aaPredicted RBP16.73■□□□□ 0.27
SF3B4-201ENST00000271628 RSRC2Q7L4I2 434 aaKnown RBP16.73■□□□□ 0.27
SF3B4-201ENST00000271628 KIAA1328Q86T90 577 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 SPIRE2Q8WWL2 714 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 RABGGTAQ92696 567 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 NLRC4Q9NPP4 1024 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 ZNF302Q9NR11 478 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 CYP26B1Q9NR63 512 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 DOCK5Q9H7D0 1870 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms