RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZNF555Q8NEP9 628 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 CDHR1Q96JP9 859 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF711Q9Y462 761 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 CLIC4Q9Y696 253 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 MYO1GB0I1T2 1018 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 PRAMEP78395 509 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 ANKRD40Q6AI12 368 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 TRIM69Q86WT6 500 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 PITPNM3Q9BZ71 974 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 TMEM60Q9H2L4 133 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 CEP55Q53EZ4 464 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF556Q9HAH1 456 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 PARVGQ9HBI0 331 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 CYP4F11Q9HBI6 524 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 AOX1Q06278 1338 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 RASSF10A6NK89 507 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 TSC22D1Q15714 1073 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 ASPRV1Q53RT3 343 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 C1orf131Q8NDD1 294 aaKnown RBP12.12□□□□□ -0.47
PTPN4-201ENST00000263708 AGBL1Q96MI9 1066 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 EYA1Q99502 592 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 TSSK1BQ9BXA7 367 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 MAGEF1Q9HAY2 307 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 MAN1C1Q9NR34 630 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 FASTKD1Q53R41 847 aaKnown RBP12.12□□□□□ -0.47
PTPN4-201ENST00000263708 RFX8Q6ZV50 586 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 C11orf96Q7Z7L8 435 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 STMN3Q9NZ72 180 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 CCDC78A2IDD5 438 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 NUGGCQ68CJ6 796 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 MIGA2Q7L4E1 593 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 DDHD2O94830 711 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 FLCNQ8NFG4 579 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 SLC10A4Q96EP9 437 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 C19orf44Q9H6X5 657 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 EML4Q9HC35 981 aaKnown RBP12.12□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF394Q53GI3 561 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 RMDN1Q96DB5 314 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 SLC13A1Q9BZW2 595 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 KDELC2Q7Z4H8 507 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 PLEKHA8Q96JA3 519 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 FAM32AQ9Y421 112 aaKnown RBP12.11□□□□□ -0.47
PTPN4-201ENST00000263708 KDM5BQ9UGL1 1544 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 SLC16A1P53985 500 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 CYP27A1Q02318 531 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 VAMP4O75379 141 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 S100A5P33763 92 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 CACNB2Q08289 660 aaPredicted RBP12.11□□□□□ -0.47
PTPN4-201ENST00000263708 NUP93Q8N1F7 819 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 OR6P1Q8NGX9 317 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 RASGRP4Q8TDF6 673 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 ARHGEF3Q9NR81 526 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 ZBTB12Q9Y330 459 aaPredicted RBP12.11□□□□□ -0.47
PTPN4-201ENST00000263708 UHRF1BP1LA0JNW5 1464 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 PTPN21Q16825 1174 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 MAD2L2Q9UI95 211 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 PCDHA4Q9UN74 947 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 K7ERI5 159 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 SGSM2O43147 1006 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 ADCY2Q08462 1091 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 KCNV2Q8TDN2 545 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 IP6K1Q92551 441 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 RASA4BC9J798 803 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 RASA4O43374 803 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 ARL4CP56559 192 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 PNMA3Q9UL41 463 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 SATB2Q9UPW6 733 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 TRAF7Q6Q0C0 670 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 NEK9Q8TD19 979 aa12.11□□□□□ -0.47
PTPN4-201ENST00000263708 PIK3R2O00459 728 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 NR1D1P20393 614 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 MXI1P50539 228 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 KRT39Q6A163 491 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 WDR11Q9BZH6 1224 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 LAD1O00515 517 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 HUS1O60921 280 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ZNF699Q32M78 642 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ACAP3Q96P50 834 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 SPON2Q9BUD6 331 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ABCC12Q96J65 1359 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 CYTH3O43739 400 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 TRIM71Q2Q1W2 868 aaKnown RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 FBXO18Q8NFZ0 1043 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 NHEJ1Q9H9Q4 299 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 TRIP4Q15650 581 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 USP28Q96RU2 1077 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 HSPA2P54652 639 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 CCDC92Q53HC0 331 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 SYDE2Q5VT97 1194 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 TBC1D1Q86TI0 1168 aaPredicted RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 C10orf53Q8N6V4 93 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 DIABLOQ9NR28 239 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 TSPOAP1O95153 1857 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ARHGEF25Q86VW2 580 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 PCDHA13Q9Y5I0 950 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ZC3H4Q9UPT8 1303 aaKnown RBP12.1□□□□□ -0.47
PTPN4-201ENST00000263708 SERPING1P05155 500 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 SNAP25P60880 206 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 CNKSR1Q969H4 720 aa12.1□□□□□ -0.47
PTPN4-201ENST00000263708 ELAC2Q9BQ52 826 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms