RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 USP17L18D6R9N7 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L22D6RA61 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L17D6RBQ6 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L19D6RCP7 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L20D6RJB6 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 E9PMD0 336 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 IFNAR2P48551 515 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 EN1Q05925 392 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L24Q0WX57 530 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 USP17L6PQ6QN14 398 aa9.34□□□□□ -0.91
PTCD3-201ENST00000254630 MMTAG2Q9BU76 263 aaKnown RBP9.34□□□□□ -0.91
PTCD3-201ENST00000254630 DLC1Q96QB1 1528 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 RIMS1Q86UR5 1692 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 HSPA8P11142 646 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 VAMP7P51809 220 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 CDR2Q01850 454 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 DHX9Q08211 1270 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 NFX1Q12986 1120 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 MB21D2Q8IYB1 491 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 OR6J1Q8NGC5 347 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 FAM20AQ96MK3 541 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 GCOM2Q9BZD3 368 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 CNOT10Q9H9A5 744 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 TRIM49BA6NDI0 452 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 TBXAS1P24557 533 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 RCAN1P53805 252 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 DRP2Q13474 957 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 KYAT1Q16773 422 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 FASTKD5Q7L8L6 764 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 MID2Q9UJV3 735 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 POTEB3A0JP26 581 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 POTECB2RU33 542 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 PALMO75781 387 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 SLC7A5Q01650 507 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 NKX1-1Q15270 411 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 C1orf228Q6PIY5 440 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 POTEBQ6S5H4 581 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 SCN4BQ8IWT1 228 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 SLC44A5Q8NCS7 719 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 FSD1LQ9BXM9 530 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 TRIM15Q9C019 465 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 DPYSL4O14531 572 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 HIP1RO75146 1068 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 P4HBP07237 508 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 TRIM67Q6ZTA4 783 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 PYROXD1Q8WU10 500 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 PSPC1Q8WXF1 523 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 RBM41Q96IZ5 413 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 ISCA1Q9BUE6 129 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 CPVLQ9H3G5 476 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 SLITRK6Q9H5Y7 841 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 STRIP2Q9ULQ0 834 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 MYBL1P10243 752 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 LLGL1Q15334 1064 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 HP1BP3Q5SSJ5 553 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 LRRC43Q8N309 656 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 BCAS4Q8TDM0 211 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 EIF2AK1Q9BQI3 630 aaKnown RBP9.33□□□□□ -0.92
PTCD3-201ENST00000254630 ELP3Q9H9T3 547 aa9.33□□□□□ -0.92
PTCD3-201ENST00000254630 PXDNLA1KZ92 1463 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 CHEK2O96017 543 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 TOGARAM2Q6ZUX3 1019 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 WHAMMQ8TF30 809 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 LXNQ9BS40 222 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 ANAPC7Q9UJX3 599 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 ASB14A6NK59 587 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 SLCO1A2P46721 670 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 CUL1Q13616 776 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 ATG16L1Q676U5 607 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 GPD1LQ8N335 351 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 CDC26Q8NHZ8 85 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 NUP85Q9BW27 656 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 KDM6AO15550 1401 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 CREB3O43889 395 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 ADORA2BP29275 332 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 PSMC5P62195 406 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 ZNF394Q53GI3 561 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 XXYLT1Q8NBI6 393 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 BPIFA3Q9BQP9 254 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 POTEFA5A3E0 1075 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 POTEIP0CG38 1075 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 SLC8A1P32418 973 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 QARSP47897 775 aaKnown RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 KNOP1Q1ED39 458 aaKnown RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 BBS9Q3SYG4 887 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 TAF1BQ53T94 588 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 POTEGQ6S5H5 508 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 POTEEQ6S8J3 1075 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 TMEM270Q6UE05 265 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 TTC25Q96NG3 672 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 CNOT8Q9UFF9 292 aaKnown RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 SYNGAP1Q96PV0 1343 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 NCF2P19878 526 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 GCLMP48507 274 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 INPP1P49441 399 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 GPC5P78333 572 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 GFPT1Q06210 699 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 MTMR2Q13614 643 aa9.32□□□□□ -0.92
PTCD3-201ENST00000254630 PDE1CQ14123 709 aaPredicted RBP9.32□□□□□ -0.92
PTCD3-201ENST00000254630 ZKSCAN8Q15776 578 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms