RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 C17orf75Q9HAS0 396 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 DMAC2Q9NW81 257 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 CGNQ9P2M7 1197 aaKnown RBP16.34■□□□□ 0.21
CCDC47-201ENST00000225726 DDX41Q9UJV9 622 aaKnown RBP16.34■□□□□ 0.21
CCDC47-201ENST00000225726 GGPS1O95749 300 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 OATP04181 439 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 GTF2BQ00403 316 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 MYBPC2Q14324 1141 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 FAM160B1Q5W0V3 765 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 RAD9BQ6WBX8 426 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 ABRAQ8N0Z2 381 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 ZNF526Q8TF50 670 aaPredicted RBP16.34■□□□□ 0.21
CCDC47-201ENST00000225726 ATP6V0A4Q9HBG4 840 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 PLXNA1Q9UIW2 1896 aa16.34■□□□□ 0.21
CCDC47-201ENST00000225726 PEX3P56589 373 aa16.33■□□□□ 0.21
CCDC47-201ENST00000225726 LY6KQ17RY6 165 aa16.33■□□□□ 0.21
CCDC47-201ENST00000225726 SLC9A9Q8IVB4 645 aa16.33■□□□□ 0.21
CCDC47-201ENST00000225726 REXO1L1PQ8IX06 675 aa16.33■□□□□ 0.21
CCDC47-201ENST00000225726 HVCN1Q96D96 273 aa16.33■□□□□ 0.21
CCDC47-201ENST00000225726 PSMC2P35998 433 aaKnown RBP16.33■□□□□ 0.2
CCDC47-201ENST00000225726 RTP1P59025 263 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 CHADLQ6NUI6 762 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 HAUS6Q7Z4H7 955 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 AFAP1L1Q8TED9 768 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 SPIRE2Q8WWL2 714 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 EDEM3Q9BZQ6 932 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 MMRN2Q9H8L6 949 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 GOLGA6L9A6NEM1 432 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 ITGBL1O95965 494 aaPredicted RBP16.33■□□□□ 0.2
CCDC47-201ENST00000225726 TUBB4AP04350 444 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 ATP4AP20648 1035 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 SMTNP53814 917 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 KCNH2Q12809 1159 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 DMP1Q13316 513 aaPredicted RBP16.33■□□□□ 0.2
CCDC47-201ENST00000225726 MTF1Q14872 753 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 ZNF792Q3KQV3 632 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 TMEM174Q8WUU8 243 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 SEPT1Q8WYJ6 367 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 IKZF4Q9H2S9 585 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 MLXIPQ9HAP2 919 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 AGPAT5Q9NUQ2 364 aa16.33■□□□□ 0.2
CCDC47-201ENST00000225726 ARIH2O95376 493 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 CASP4P49662 377 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 SNRPFP62306 86 aaKnown RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 KCNMA1Q12791 1236 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 MEA1Q16626 185 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 CELF3Q5SZQ8 465 aaKnown RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 NEK11Q8NG66 645 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 PCYT2Q99447 389 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 SLC16A4O15374 487 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 STRNO43815 780 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 AFPP02771 609 aaKnown RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 XRCC5P13010 732 aaKnown RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 TERF1P54274 439 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 FBXO16Q8IX29 292 aaPredicted RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 FAM186BQ8IYM0 893 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 BORCS6Q96GS4 357 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 NIFKQ9BYG3 293 aaKnown RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 NPTX2P47972 431 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 MTERF2Q49AM1 385 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 C12orf56Q8IXR9 622 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 CCDC155Q8N6L0 562 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 PRIMPOLQ96LW4 560 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 PTPN18Q99952 460 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 XPNPEP1Q9NQW7 623 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 FAM207AQ9NSI2 230 aaPredicted RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 ZNHIT6Q9NWK9 470 aaKnown RBP16.32■□□□□ 0.2
CCDC47-201ENST00000225726 FRMD4BQ9Y2L6 1034 aa16.32■□□□□ 0.2
CCDC47-201ENST00000225726 CCDC175P0C221 793 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 ADORA2AP29274 412 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 HUNKP57058 714 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 IVNS1ABPQ9Y6Y0 642 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 CCDC62Q6P9F0 684 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 ARMCX2Q7L311 632 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 TMEM161BQ8NDZ6 487 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 NTPCRQ9BSD7 190 aaKnown RBP16.31■□□□□ 0.2
CCDC47-201ENST00000225726 KMT5AQ9NQR1 393 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 NRBP2Q9NSY0 501 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 EXOC7Q9UPT5 735 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 ADGRG1Q9Y653 693 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 MCM3APO60318 1980 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 CCDC169A6NNP5 214 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 TCF7P36402 384 aaPredicted RBP16.31■□□□□ 0.2
CCDC47-201ENST00000225726 CYP2J2P51589 502 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 EMC2Q15006 297 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 FAM110CQ1W6H9 321 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 WDR59Q6PJI9 974 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 ZNF467Q7Z7K2 595 aaPredicted RBP16.31■□□□□ 0.2
CCDC47-201ENST00000225726 DESI2Q9BSY9 194 aa16.31■□□□□ 0.2
CCDC47-201ENST00000225726 LSM14BQ9BX40 385 aaKnown RBP16.31■□□□□ 0.2
CCDC47-201ENST00000225726 EPHB6O15197 1021 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 STAT5BP51692 787 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 POLGP54098 1239 aaPredicted RBP16.3■□□□□ 0.2
CCDC47-201ENST00000225726 BSNDQ8WZ55 320 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 GPR20Q99678 358 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 KCNG1Q9UIX4 513 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 PPME1Q9Y570 386 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 LGR5O75473 907 aa16.3■□□□□ 0.2
CCDC47-201ENST00000225726 HNRNPH3P31942 346 aaKnown RBP16.3■□□□□ 0.2
CCDC47-201ENST00000225726 CDK17Q00537 523 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms