RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 MPHOSPH10O00566 681 aaKnown RBP13.46□□□□□ -0.25
NUP88-201ENST00000225696 PDXKO00764 312 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 MEIS2O14770 477 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 LRRN2O75325 713 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 GCNT3O95395 438 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 CCDC172P0C7W6 258 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 IL1R1P14778 569 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 SHMT1P34896 483 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 MARCKSL1P49006 195 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 PTENP60484 403 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 DR1Q01658 176 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 MKRN4PQ13434 485 aaPredicted RBP13.46□□□□□ -0.25
NUP88-201ENST00000225696 PLS1Q14651 629 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 VPS72Q15906 364 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 SNCBQ16143 134 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 FAM182BQ5T319 152 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 WLSQ5T9L3 541 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 PPP1R18Q6NYC8 613 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 SYT2Q8N9I0 419 aaPredicted RBP13.46□□□□□ -0.25
NUP88-201ENST00000225696 C3orf20Q8ND61 904 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 ATXN2LQ8WWM7 1075 aaKnown RBP13.46□□□□□ -0.25
NUP88-201ENST00000225696 C18orf8Q96DM3 657 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 CHMP6Q96FZ7 201 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 ACTR5Q9H9F9 607 aaPredicted RBP13.46□□□□□ -0.25
NUP88-201ENST00000225696 FAM114A2Q9NRY5 505 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 RGL1Q9NZL6 768 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 POLLQ9UGP5 575 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.46□□□□□ -0.25
NUP88-201ENST00000225696 GAKO14976 1311 aa13.46□□□□□ -0.25
NUP88-201ENST00000225696 NMT1P30419 496 aaKnown RBP13.45□□□□□ -0.26
NUP88-201ENST00000225696 CDR1P51861 262 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 SLC29A2Q14542 456 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 DRAP1Q14919 205 aaPredicted RBP13.45□□□□□ -0.26
NUP88-201ENST00000225696 CBWD6Q4V339 395 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 LACTB2Q53H82 288 aaPredicted RBP13.45□□□□□ -0.26
NUP88-201ENST00000225696 CBWD3Q5JTY5 395 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 CBWD5Q5RIA9 395 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 LMBR1Q8WVP7 490 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 FAM163AQ96GL9 167 aaPredicted RBP13.45□□□□□ -0.26
NUP88-201ENST00000225696 ERP44Q9BS26 406 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 SYT11Q9BT88 431 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 FAM129AQ9BZQ8 928 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 SEMA4AQ9H3S1 761 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 AZI2Q9H6S1 392 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 COL24A1Q17RW2 1714 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 ZMYM2Q9UBW7 1377 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 RPTORQ8N122 1335 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 MYO3BQ8WXR4 1341 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 EML1O00423 815 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 PPIP5K2O43314 1243 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 MMEP08473 750 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 PLCG2P16885 1265 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 RDXP35241 583 aaKnown RBP13.45□□□□□ -0.26
NUP88-201ENST00000225696 SLCO1A2P46721 670 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 XRCC4Q13426 336 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 NBPF9Q3BBW0 867 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 CPNE8Q86YQ8 564 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 LRRC34Q8IZ02 419 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 PIGOQ8TEQ8 1089 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 CRYGNQ8WXF5 182 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 KRT35Q92764 455 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 SELENOSQ9BQE4 189 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 TYW1Q9NV66 732 aaKnown RBP13.45□□□□□ -0.26
NUP88-201ENST00000225696 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.45□□□□□ -0.26
NUP88-201ENST00000225696 GGT7Q9UJ14 662 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 DNM3Q9UQ16 869 aa13.45□□□□□ -0.26
NUP88-201ENST00000225696 CYP3A7-CYP3A51PA0A087WV96 503 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 KIAA0391O15091 583 aaKnown RBP13.44□□□□□ -0.26
NUP88-201ENST00000225696 CALUO43852 315 aaPredicted RBP13.44□□□□□ -0.26
NUP88-201ENST00000225696 ECM2O94769 699 aaPredicted RBP13.44□□□□□ -0.26
NUP88-201ENST00000225696 TRIM37O94972 964 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 TRIM49P0CI25 452 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 TRIM49CP0CI26 452 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 CYP3A7P24462 503 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 SOX5P35711 763 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 PMS2P54278 862 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 NPEPPSP55786 919 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 GTF2IP78347 998 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 ARHGAP4P98171 946 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 FAM98CQ17RN3 349 aaKnown RBP13.44□□□□□ -0.26
NUP88-201ENST00000225696 TTC27Q6P3X3 843 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 JAMLQ86YT9 394 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 ZFPM1Q8IX07 1006 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 SYCE1Q8N0S2 351 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 RFFLQ8WZ73 363 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 GRHL1Q9NZI5 618 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 SWAP70Q9UH65 585 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 DNAJC12Q9UKB3 198 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 TTC7AQ9ULT0 858 aaPredicted RBP13.44□□□□□ -0.26
NUP88-201ENST00000225696 DAAM1Q9Y4D1 1078 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 TCRBV7S2A1N4TA0A589 114 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 FOXO6A8MYZ6 492 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 ANKRD63C9JTQ0 380 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 RPA1P27694 616 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 STAT1P42224 750 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 MMP13P45452 471 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 ELF3P78545 371 aaPredicted RBP13.44□□□□□ -0.26
NUP88-201ENST00000225696 CCDC38Q502W7 563 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 VPS36Q86VN1 386 aa13.44□□□□□ -0.26
NUP88-201ENST00000225696 KIRREL3Q8IZU9 778 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms