RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TARBP2Q15633 366 aaKnown RBP20.36■□□□□ 0.85
CLN3-254ENST00000637050 MTERF2Q49AM1 385 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 PRAMEF19Q5SWL8 479 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 MAEAQ7L5Y9 396 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.36■□□□□ 0.85
CLN3-254ENST00000637050 FAM178BQ8IXR5 827 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 ZNF507Q8TCN5 953 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 GLG1Q92896 1179 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 KCTD10Q9H3F6 313 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 SMARCAD1Q9H4L7 1026 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 IFNKQ9P0W0 207 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 EIF3DO15371 548 aaKnown RBP eCLIP20.35■□□□□ 0.85
CLN3-254ENST00000637050 ADCY6O43306 1168 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 SERPINC1P01008 464 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 MAPTP10636 758 aaKnown RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 PLS3P13797 630 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 CDC25BP30305 580 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 TNFAIP2Q03169 654 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 ZNF720Q7Z2F6 126 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 TRIM50Q86XT4 487 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 IRF2BP1Q8IU81 584 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 CSGALNACT2Q8N6G5 542 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 MCPH1Q8NEM0 835 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 BBXQ8WY36 941 aaPredicted RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 SRRTQ9BXP5 876 aaKnown RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 XPO4Q9C0E2 1151 aaKnown RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 XPNPEP1Q9NQW7 623 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 PPME1Q9Y570 386 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 THSD7BQ9C0I4 1608 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 TRPA1O75762 1119 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 GCNT3O95395 438 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 HOXD8P13378 290 aaPredicted RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 NMT1P30419 496 aaKnown RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 HOXD13P35453 343 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 FAM102BQ5T8I3 360 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 ATP8B4Q8TF62 1192 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 AFG1LQ8WV93 481 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 KIFAP3Q92845 792 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 TSG101Q99816 390 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 STRA6Q9BX79 667 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 DHX33Q9H6R0 707 aaKnown RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 ATP6V0A4Q9HBG4 840 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 GPRC5CQ9NQ84 441 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 GABRQQ9UN88 632 aa20.35■□□□□ 0.85
CLN3-254ENST00000637050 GNEQ9Y223 722 aaKnown RBP20.35■□□□□ 0.85
CLN3-254ENST00000637050 MYH11P35749 1972 aa20.34■□□□□ 0.85
CLN3-254ENST00000637050 UBASH3AP57075 661 aa20.34■□□□□ 0.85
CLN3-254ENST00000637050 HTRA3P83110 453 aa20.34■□□□□ 0.85
CLN3-254ENST00000637050 SPAG1Q07617 926 aa20.34■□□□□ 0.85
CLN3-254ENST00000637050 KIF22Q14807 665 aa20.34■□□□□ 0.85
CLN3-254ENST00000637050 KNOP1Q1ED39 458 aaKnown RBP20.34■□□□□ 0.85
CLN3-254ENST00000637050 APTXQ7Z2E3 356 aaKnown RBP20.34■□□□□ 0.85
CLN3-254ENST00000637050 NELFCDQ8IXH7 590 aa20.34■□□□□ 0.85
CLN3-254ENST00000637050 UBE4BO95155 1302 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 CBFA2T2O43439 604 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 PPFIA4O75335 1185 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 PPP1R37O75864 691 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 PRPF6O94906 941 aaKnown RBP20.33■□□□□ 0.85
CLN3-254ENST00000637050 LGALS2P05162 132 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 RFC5P40937 340 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 FLT3LGP49771 235 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 RTP1P59025 263 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 CAP1Q01518 475 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 EMC2Q15006 297 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 PLCB4Q15147 1175 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 STXBP4Q6ZWJ1 553 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 OR6J1Q8NGC5 347 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 NAP1L5Q96NT1 182 aaPredicted RBP20.33■□□□□ 0.85
CLN3-254ENST00000637050 C17orf75Q9HAS0 396 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 LIMA1Q9UHB6 759 aaKnown RBP20.33■□□□□ 0.85
CLN3-254ENST00000637050 NRBP1Q9UHY1 535 aa20.33■□□□□ 0.85
CLN3-254ENST00000637050 LRRC10BA6NIK2 292 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 KCNJ18B7U540 433 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 MARK3P27448 753 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 POLGP54098 1239 aaPredicted RBP20.32■□□□□ 0.84
CLN3-254ENST00000637050 ALCAMQ13740 583 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 KCNJ12Q14500 433 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 TCP11X2Q5H9J9 407 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 PPP4R3CPQ6ZMV5 832 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 ST6GALNAC4Q9H4F1 302 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 ERAP1Q9NZ08 941 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 TRAF3IP3Q9Y228 551 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 PCDHB13Q9Y5F0 798 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 PDXKO00764 312 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 PRKCZQ05513 592 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 EDRF1Q3B7T1 1238 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 ZC2HC1CQ53FD0 456 aaPredicted RBP20.32■□□□□ 0.84
CLN3-254ENST00000637050 LRRC55Q6ZSA7 311 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 SLC17A8Q8NDX2 589 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 CTAGE1Q96RT6 745 aa20.32■□□□□ 0.84
CLN3-254ENST00000637050 ZBTB42B2RXF5 422 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 HBP1O60381 514 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 FGFR1OPO95684 399 aaKnown RBP20.31■□□□□ 0.84
CLN3-254ENST00000637050 MMP3P08254 477 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 EEF1GP26641 437 aaKnown RBP20.31■□□□□ 0.84
CLN3-254ENST00000637050 NCKAP1LP55160 1127 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 PEX3P56589 373 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 SOX10P56693 466 aa20.31■□□□□ 0.84
CLN3-254ENST00000637050 FKBP3Q00688 224 aaKnown RBP20.31■□□□□ 0.84
CLN3-254ENST00000637050 KCNA1Q09470 495 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms