RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 COBLL1Q53SF7 1204 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 PLA2G4FQ68DD2 849 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 SLAIN1Q8ND83 568 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 CEP170P1Q96L14 293 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 BPIFA3Q9BQP9 254 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 AP5M1Q9H0R1 490 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 EXOC1Q9NV70 894 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 ERAP1Q9NZ08 941 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 GOLGA6L19H0YKK7 550 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 AP5Z1O43299 807 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 PRKAR2AP13861 404 aaKnown RBP15.66■□□□□ 0.1
CLN3-242ENST00000635958 IDEP14735 1019 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 ZNF165P49910 485 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 PLCB4Q15147 1175 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 C11orf57Q6ZUT1 292 aaPredicted RBP15.66■□□□□ 0.1
CLN3-242ENST00000635958 TRIM50Q86XT4 487 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 MRFAP1L1Q96HT8 127 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 NAT10Q9H0A0 1025 aaKnown RBP15.66■□□□□ 0.1
CLN3-242ENST00000635958 UPF3AQ9H1J1 476 aaKnown RBP15.66■□□□□ 0.1
CLN3-242ENST00000635958 KCNF1Q9H3M0 494 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 SEPT9Q9UHD8 586 aaPredicted RBP15.66■□□□□ 0.1
CLN3-242ENST00000635958 DACH1Q9UI36 760 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 PCDHA2Q9Y5H9 948 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 COL4A3BPQ9Y5P4 624 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 PPP1R3GB7ZBB8 358 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 CTIFO43310 598 aaKnown RBP15.65■□□□□ 0.1
CLN3-242ENST00000635958 DGAT1O75907 488 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 GAP43P17677 238 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 CPT1AP50416 773 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 GJA9P57773 515 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 STK4Q13043 487 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 COASYQ13057 564 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 MAPK7Q13164 816 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 DRC7Q8IY82 874 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 DAW1Q8N136 415 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 PDCL2Q8N4E4 241 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 CCDC43Q96MW1 224 aaKnown RBP15.65■□□□□ 0.1
CLN3-242ENST00000635958 TRIM5Q9C035 493 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 TRIM17Q9Y577 477 aa15.65■□□□□ 0.1
CLN3-242ENST00000635958 SMTNL1A8MU46 457 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 HBP1O60381 514 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 RAD51AP2Q09MP3 1159 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 BRDTQ58F21 947 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 HERC4Q5GLZ8 1057 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 TRMT1LQ7Z2T5 733 aaKnown RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 LENG1Q96BZ8 264 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 SH2D3AQ9BRG2 576 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 RNPEPQ9H4A4 650 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 DHX33Q9H6R0 707 aaKnown RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 OLFML3Q9NRN5 406 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 SEL1LQ9UBV2 794 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 RSPH10B2B2RC85 870 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 H3BRB1 525 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 USO1O60763 962 aaKnown RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 HIP1RO75146 1068 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 RSPH10BP0C881 870 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 CD44P16070 742 aaKnown RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 ERCC5P28715 1186 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 CCND3P30281 292 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 RFC5P40937 340 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 PPP1R2P41236 205 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 CACNB1Q02641 598 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 IQCB1Q15051 598 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 FAM26FQ5R3K3 315 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 ADSSL1Q8N142 457 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 KIAA0895Q8NCT3 520 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 MCPH1Q8NEM0 835 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 TUT1Q9H6E5 874 aaKnown RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 PARVGQ9HBI0 331 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 ZNF215Q9UL58 517 aaPredicted RBP15.64■□□□□ 0.09
CLN3-242ENST00000635958 GDAQ9Y2T3 454 aa15.64■□□□□ 0.09
CLN3-242ENST00000635958 HTTP42858 3142 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 ZBTB42B2RXF5 422 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 KPNA6O60684 536 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 TBCAO75347 108 aaKnown RBP15.63■□□□□ 0.09
CLN3-242ENST00000635958 FAM13AO94988 1023 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 TUBB4AP04350 444 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 RARBP10826 455 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 CNGA1P29973 690 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 GRK4P32298 578 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 PRCPP42785 496 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 FSCN1Q16658 493 aaKnown RBP15.63■□□□□ 0.09
CLN3-242ENST00000635958 MTERF2Q49AM1 385 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 EXOC8Q8IYI6 725 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 SMYD4Q8IYR2 804 aaPredicted RBP15.63■□□□□ 0.09
CLN3-242ENST00000635958 XPNPEP1Q9NQW7 623 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 PYCARDQ9ULZ3 195 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 PTCH2Q9Y6C5 1203 aa15.63■□□□□ 0.09
CLN3-242ENST00000635958 ARID2Q68CP9 1835 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 KIF2AO00139 706 aaPredicted RBP15.62■□□□□ 0.09
CLN3-242ENST00000635958 MAFO75444 373 aaPredicted RBP15.62■□□□□ 0.09
CLN3-242ENST00000635958 F2P00734 622 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 MARK3P27448 753 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 RTP1P59025 263 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 ZNF484Q5JVG2 852 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 CCDC186Q7Z3E2 898 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 LUZP1Q86V48 1076 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 SPC24Q8NBT2 197 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 ANKRD7Q92527 254 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 KAT2BQ92831 832 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms