RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 GPR32O75388 356 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 PLA2G5P39877 138 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 JAK3P52333 1124 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 PAN2Q504Q3 1202 aaKnown RBP20.82■□□□□ 0.92
CLN3-241ENST00000635861 ADHFE1Q8IWW8 467 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 METTL13Q8N6R0 699 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 KLHL23Q8NBE8 558 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 RDM1Q8NG50 284 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 POP1Q99575 1024 aaKnown RBP20.82■□□□□ 0.92
CLN3-241ENST00000635861 CDHR5Q9HBB8 845 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 ZSWIM6Q9HCJ5 1215 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 DISC1Q9NRI5 854 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 TMEM161AQ9NX61 479 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 VPS54Q9P1Q0 977 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 TRIOO75962 3097 aa20.82■□□□□ 0.92
CLN3-241ENST00000635861 C19orf67A6NJJ6 358 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 MSH4O15457 936 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 MGEA5O60502 916 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 NLRP5P59047 1200 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 ZP2Q05996 745 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 SMAD2Q15796 467 aaKnown RBP20.81■□□□□ 0.92
CLN3-241ENST00000635861 KIZQ2M2Z5 673 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 GALNT17Q6IS24 598 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 FAM228AQ86W67 206 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 RASGRP4Q8TDF6 673 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 POF1BQ8WVV4 589 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 ZNF274Q96GC6 653 aaPredicted RBP20.81■□□□□ 0.92
CLN3-241ENST00000635861 OSMRQ99650 979 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 TEKT3Q9BXF9 490 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 TM6SF1Q9BZW5 370 aa20.81■□□□□ 0.92
CLN3-241ENST00000635861 HOXA2O43364 376 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 GAS7O60861 476 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 DEXIO95424 95 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 OATP04181 439 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 CCT2P78371 535 aaKnown RBP20.8■□□□□ 0.92
CLN3-241ENST00000635861 FAM189BP81408 668 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 SSRP1Q08945 709 aaKnown RBP20.8■□□□□ 0.92
CLN3-241ENST00000635861 ADAM15Q13444 863 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 SMAD4Q13485 552 aaKnown RBP20.8■□□□□ 0.92
CLN3-241ENST00000635861 Q4G0T1 1027 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 CPLX2Q6PUV4 134 aaKnown RBP20.8■□□□□ 0.92
CLN3-241ENST00000635861 MOXD1Q6UVY6 613 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 LINC01465Q8N7H1 131 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 SLC5A5Q92911 643 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 UPF3BQ9BZI7 483 aaKnown RBP20.8■□□□□ 0.92
CLN3-241ENST00000635861 ATP6V0A4Q9HBG4 840 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 C11orf16Q9NQ32 467 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 RAPGEFL1Q9UHV5 662 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 PCDHA4Q9UN74 947 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 CYP46A1Q9Y6A2 500 aa20.8■□□□□ 0.92
CLN3-241ENST00000635861 PRR33A8MZF0 331 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 MBTPS2O43462 519 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 VTNP04004 478 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 TOB2Q14106 344 aaPredicted RBP20.79■□□□□ 0.92
CLN3-241ENST00000635861 LRCH2Q5VUJ6 765 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 PDE12Q6L8Q7 609 aaKnown RBP20.79■□□□□ 0.92
CLN3-241ENST00000635861 EFCAB12Q6NXP0 572 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 EFHBQ8N7U6 833 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 FAM122AQ96E09 287 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 NCOA5Q9HCD5 579 aaKnown RBP20.79■□□□□ 0.92
CLN3-241ENST00000635861 CD207Q9UJ71 328 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 AKT3Q9Y243 479 aa20.79■□□□□ 0.92
CLN3-241ENST00000635861 CYP3A7-CYP3A51PA0A087WV96 503 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 TBKBP1A7MCY6 615 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 CPLX1O14810 134 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 TBX10O75333 385 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 EIF4BP23588 611 aaKnown RBP20.78■□□□□ 0.92
CLN3-241ENST00000635861 CYP3A7P24462 503 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 DNAJB1P25685 340 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 CDC42EP1Q00587 391 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 PRKCEQ02156 737 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 DSC3Q14574 896 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 SPOUT1Q5T280 376 aaKnown RBP20.78■□□□□ 0.92
CLN3-241ENST00000635861 DAGLBQ8NCG7 672 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 TBCKQ8TEA7 893 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 UIMC1Q96RL1 719 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 DCXO43602 365 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 EDIL3O43854 480 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 ZNF862O60290 1169 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 EYA4O95677 639 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 ZSCAN20P17040 1043 aaPredicted RBP20.78■□□□□ 0.92
CLN3-241ENST00000635861 LAG3P18627 525 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 GATMP50440 423 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 CLCN3P51790 818 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 NLRP11P59045 1033 aaKnown RBP20.78■□□□□ 0.92
CLN3-241ENST00000635861 DLX2Q07687 328 aaPredicted RBP20.78■□□□□ 0.92
CLN3-241ENST00000635861 ADAMTS10Q9H324 1103 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 IGFLR1Q9H665 355 aa20.78■□□□□ 0.92
CLN3-241ENST00000635861 M0R2N6 131 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 PSMD10O75832 226 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 NDUFV1P49821 464 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 FAM102BQ5T8I3 360 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 TRMT1LQ7Z2T5 733 aaKnown RBP20.77■□□□□ 0.91
CLN3-241ENST00000635861 BLIDQ8IZY5 108 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 RSPH1Q8WYR4 309 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 MSLNLQ96KJ4 702 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 CDCA3Q99618 268 aaPredicted RBP20.77■□□□□ 0.91
CLN3-241ENST00000635861 TMEM117Q9H0C3 514 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 TLR9Q9NR96 1032 aa20.77■□□□□ 0.91
CLN3-241ENST00000635861 LZTS1Q9Y250 596 aa20.77■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms