RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SLC5A5Q92911 643 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 FIZ1Q96SL8 496 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 TAF1DQ9H5J8 278 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 FAM13AO94988 1023 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 STAT1P42224 750 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 NOP2P46087 812 aaKnown RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 CUL1Q13616 776 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 C10orf67Q8IYJ2 551 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 FAM186BQ8IYM0 893 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 DMAC2Q9NW81 257 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 DAAM1Q9Y4D1 1078 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 PCDHB13Q9Y5F0 798 aa13.93□□□□□ -0.18
LINC00540-203ENST00000631321 ZNF646O15015 1829 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-203ENST00000631321 FRMPD4Q14CM0 1322 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 PGRMC1O00264 195 aaKnown RBP13.92□□□□□ -0.18
LINC00540-203ENST00000631321 ERVK-9P63128 1117 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 SYCE1Q8N0S2 351 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 METTL13Q8N6R0 699 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 SYT11Q9BT88 431 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 PARVGQ9HBI0 331 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 KCND2Q9NZV8 630 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 NCANO14594 1321 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 CCDC188H7C350 402 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 PPP1R12BO60237 982 aaPredicted RBP13.92□□□□□ -0.18
LINC00540-203ENST00000631321 CEP104O60308 925 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 ECHS1P30084 290 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 SOX5P35711 763 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 MAGEA9P43362 315 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 RNASE9P60153 205 aaKnown RBP13.92□□□□□ -0.18
LINC00540-203ENST00000631321 GNGT1P63211 74 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 CTTNQ14247 550 aaKnown RBP13.92□□□□□ -0.18
LINC00540-203ENST00000631321 GJB7Q6PEY0 223 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 LRIG3Q6UXM1 1119 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 KDM7AQ6ZMT4 941 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 KLHL7Q8IXQ5 586 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 MYCT1Q8N699 235 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 PIGOQ8TEQ8 1089 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 DYDC2Q96IM9 177 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 STK33Q9BYT3 514 aa13.92□□□□□ -0.18
LINC00540-203ENST00000631321 SHTN1A0MZ66 631 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 F8VZ95 297 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 NMT1P30419 496 aaKnown RBP13.91□□□□□ -0.18
LINC00540-203ENST00000631321 GUCY2FP51841 1108 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 PRELPP51888 382 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 STAT2P52630 851 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 TRADDQ15628 312 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 LRCH2Q5VUJ6 765 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 ZNF720Q7Z2F6 126 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 NT5DC3Q86UY8 548 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 LNX1Q8TBB1 728 aaPredicted RBP13.91□□□□□ -0.18
LINC00540-203ENST00000631321 HES6Q96HZ4 224 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 GOLPH3Q9H4A6 298 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 PLEKHA4Q9H4M7 779 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 TTC7AQ9ULT0 858 aaPredicted RBP13.91□□□□□ -0.18
LINC00540-203ENST00000631321 SFI1A8K8P3 1242 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 EVI5O60447 810 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 KRT14P02533 472 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 MMP10P09238 476 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 LMNB1P20700 586 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 FMO5P49326 533 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 PPP2R5AQ15172 486 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 PEX26Q7Z412 305 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 FMNL3Q8IVF7 1028 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 TPH2Q8IWU9 490 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 U2AF1L4Q8WU68 220 aaKnown RBP13.91□□□□□ -0.18
LINC00540-203ENST00000631321 FAM107BQ9H098 131 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 TDRD3Q9H7E2 651 aaKnown RBP13.91□□□□□ -0.18
LINC00540-203ENST00000631321 POLD4Q9HCU8 107 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 ODF2LQ9ULJ1 636 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 NOC2LQ9Y3T9 749 aaKnown RBP13.91□□□□□ -0.18
LINC00540-203ENST00000631321 SCN9AQ15858 1988 aa13.91□□□□□ -0.18
LINC00540-203ENST00000631321 STYK1Q6J9G0 422 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 B3GNT9Q6UX72 402 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 STXBP4Q6ZWJ1 553 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 KRT27Q7Z3Y8 459 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 DNAAF5Q86Y56 855 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 SEC14L1Q92503 715 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 ZNF622Q969S3 477 aaKnown RBP eCLIP13.9□□□□□ -0.18
LINC00540-203ENST00000631321 NACC1Q96RE7 527 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 STRA6Q9BX79 667 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 SLITRK6Q9H5Y7 841 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 HERC5Q9UII4 1024 aaKnown RBP13.9□□□□□ -0.18
LINC00540-203ENST00000631321 TMX2Q9Y320 296 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 GCOM1H8Y6P7 765 aaPredicted RBP13.9□□□□□ -0.18
LINC00540-203ENST00000631321 SART1O43290 800 aaKnown RBP13.9□□□□□ -0.18
LINC00540-203ENST00000631321 ZEB2O60315 1214 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 TMEM253P0C7T8 217 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 POLR2MP0CAP2 368 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 GALCP54803 685 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 ZC2HC1CQ53FD0 456 aaPredicted RBP13.9□□□□□ -0.18
LINC00540-203ENST00000631321 CC2D2BQ6DHV5 1058 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 SLC9A9Q8IVB4 645 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 BCAS4Q8TDM0 211 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 GPR88Q9GZN0 384 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 IKZF4Q9H2S9 585 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 RANBP17Q9H2T7 1088 aaKnown RBP13.9□□□□□ -0.18
LINC00540-203ENST00000631321 AGPAT3Q9NRZ7 376 aa13.9□□□□□ -0.18
LINC00540-203ENST00000631321 HMGB1P1B2RPK0 211 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms