RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 DEFB128Q7Z7B8 93 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 EXOC8Q8IYI6 725 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 LINC00301Q8NCQ3 95 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 CCDC43Q96MW1 224 aaKnown RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 DHX33Q9H6R0 707 aaKnown RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 SUGCTQ9HAC7 445 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 DBR1Q9UK59 544 aaKnown RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 SRPRBQ9Y5M8 271 aaKnown RBP22.66■■□□□ 1.22
PTCD3-220ENST00000627371 CDY2AQ9Y6F7 541 aa22.66■■□□□ 1.22
PTCD3-220ENST00000627371 MICAL3Q7RTP6 2002 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 KDM3AQ9Y4C1 1321 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 M0QZ92 97 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 POLGP54098 1239 aaPredicted RBP22.65■■□□□ 1.22
PTCD3-220ENST00000627371 TMEM62Q0P6H9 643 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 STK38Q15208 465 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 HYIQ5T013 277 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 SLC7A3Q8WY07 619 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 MAP7D2Q96T17 732 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.65■■□□□ 1.223e-8■□□□□ 9.8
PTCD3-220ENST00000627371 TFIP11Q9UBB9 837 aaKnown RBP22.65■■□□□ 1.22
PTCD3-220ENST00000627371 DAXXQ9UER7 740 aaPredicted RBP22.65■■□□□ 1.22
PTCD3-220ENST00000627371 KIAA1024Q9UPX6 916 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 TRPV2Q9Y5S1 764 aa22.65■■□□□ 1.22
PTCD3-220ENST00000627371 TRIOBPQ9H2D6 2365 aa22.64■■□□□ 1.22
PTCD3-220ENST00000627371 A0A087WWV3 80 aa22.64■■□□□ 1.21
PTCD3-220ENST00000627371 A0A1W2PPC1 479 aa22.64■■□□□ 1.21
PTCD3-220ENST00000627371 SLC26A4O43511 780 aa22.64■■□□□ 1.21
PTCD3-220ENST00000627371 MKRN4PQ13434 485 aaPredicted RBP22.64■■□□□ 1.21
PTCD3-220ENST00000627371 TMEM240Q5SV17 173 aa22.64■■□□□ 1.21
PTCD3-220ENST00000627371 TDHQ8IZJ6 230 aa22.64■■□□□ 1.21
PTCD3-220ENST00000627371 DDX19AQ9NUU7 478 aaKnown RBP22.64■■□□□ 1.21
PTCD3-220ENST00000627371 AKT3Q9Y243 479 aa22.64■■□□□ 1.21
PTCD3-220ENST00000627371 LAMA3Q16787 3333 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 SPTLC2O15270 562 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 GAS2O43903 313 aaKnown RBP22.63■■□□□ 1.21
PTCD3-220ENST00000627371 PPP6R2O75170 966 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 DGAT1O75907 488 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 VTNP04004 478 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 NUCB2P80303 420 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 DNM1Q05193 864 aaKnown RBP22.63■■□□□ 1.21
PTCD3-220ENST00000627371 DRP2Q13474 957 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 EMC2Q15006 297 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 SHHQ15465 462 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 C9orf50Q5SZB4 431 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 ZNF365Q70YC5 407 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 CABP7Q86V35 215 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 ZNF710Q8N1W2 664 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 KRI1Q8N9T8 703 aaKnown RBP22.63■■□□□ 1.21
PTCD3-220ENST00000627371 CELF4Q9BZC1 486 aaKnown RBP22.63■■□□□ 1.21
PTCD3-220ENST00000627371 NT5C3AQ9H0P0 336 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 CSRNP2Q9H175 543 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 CFAP45Q9UL16 551 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 ATP6V1DQ9Y5K8 247 aa22.63■■□□□ 1.21
PTCD3-220ENST00000627371 FGBP02675 491 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 UBA7P41226 1012 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 DNM2P50570 870 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 FBXO47Q5MNV8 452 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 KCTD17Q8N5Z5 321 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 PNMA5Q96PV4 448 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 MTRQ99707 1265 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 OSBPL7Q9BZF2 842 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 SQORQ9Y6N5 450 aa22.62■■□□□ 1.21
PTCD3-220ENST00000627371 GPR32O75388 356 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 GRB10Q13322 594 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 ZRSR1Q15695 479 aaKnown RBP22.61■■□□□ 1.21
PTCD3-220ENST00000627371 PLEKHG4Q58EX7 1191 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 CNKSR3Q6P9H4 555 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 HERVK_113Q902F9 699 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 CDK5RAP3Q96JB5 506 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 CLIC6Q96NY7 704 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 CCSER1Q9C0I3 900 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 ATP6V0A4Q9HBG4 840 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 XPNPEP1Q9NQW7 623 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 BMP2KQ9NSY1 1161 aaPredicted RBP22.61■■□□□ 1.21
PTCD3-220ENST00000627371 SUCLA2Q9P2R7 463 aaPredicted RBP22.61■■□□□ 1.21
PTCD3-220ENST00000627371 DNM3Q9UQ16 869 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 PTPRSQ13332 1948 aa22.61■■□□□ 1.21
PTCD3-220ENST00000627371 MYH11P35749 1972 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 ARHGEF35A5YM69 484 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 USO1O60763 962 aaKnown RBP22.6■■□□□ 1.21
PTCD3-220ENST00000627371 EYA4O95677 639 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 GHRP10912 638 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 ACTN1P12814 892 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 GPC3P51654 580 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 LPIN1Q14693 890 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 KIZQ2M2Z5 673 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 TMEM119Q4V9L6 283 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 TSHZ1Q6ZSZ6 1077 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 OTOP2Q7RTS6 562 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 USP38Q8NB14 1042 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 KCNG4Q8TDN1 519 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 TCP11Q8WWU5 503 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 CALML4Q96GE6 196 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 RNPC3Q96LT9 517 aaKnown RBP22.6■■□□□ 1.21
PTCD3-220ENST00000627371 PPP1R16BQ96T49 567 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 BHMT2Q9H2M3 363 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 GINS2Q9Y248 185 aa22.6■■□□□ 1.21
PTCD3-220ENST00000627371 E9PMD0 336 aa22.59■■□□□ 1.21
PTCD3-220ENST00000627371 CRYBB1P53674 252 aaPredicted RBP22.59■■□□□ 1.21
PTCD3-220ENST00000627371 NLRP11P59045 1033 aaKnown RBP22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 183.3 ms