RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 KIF21AQ7Z4S6 1674 aa7.44□□□□□ -1.22
VPS29-212ENST00000621131 HMGXB3Q12766 1538 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 PPP1R12AO14974 1030 aaPredicted RBP7.43□□□□□ -1.22
VPS29-212ENST00000621131 MUSKO15146 869 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 MAFO75444 373 aaPredicted RBP7.43□□□□□ -1.22
VPS29-212ENST00000621131 ASLP04424 464 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 FILIP1Q7Z7B0 1213 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 SH3TC2Q8TF17 1288 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 DPYSL5Q9BPU6 564 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 ZSWIM4Q9H7M6 989 aa7.43□□□□□ -1.22
VPS29-212ENST00000621131 TNPO3Q9Y5L0 923 aaKnown RBP7.43□□□□□ -1.22
VPS29-212ENST00000621131 RAD17O75943 681 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 SDSP20132 328 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 APEX1P27695 318 aaKnown RBP7.42□□□□□ -1.22
VPS29-212ENST00000621131 MRE11P49959 708 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 ALDH6A1Q02252 535 aaKnown RBP7.42□□□□□ -1.22
VPS29-212ENST00000621131 ZNF460Q14592 562 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 CCDC144BQ3MJ40 725 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 HS1BP3Q53T59 392 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 SPDYAQ5MJ70 313 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 CALML6Q8TD86 181 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 EDAQ92838 391 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 ERCC4Q92889 916 aaPredicted RBP7.42□□□□□ -1.22
VPS29-212ENST00000621131 DRC1Q96MC2 740 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 ARHGEF11O15085 1522 aa7.42□□□□□ -1.22
VPS29-212ENST00000621131 CDC14BO60729 498 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 KRT37O76014 449 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 STAT5BP51692 787 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 Q8N1X5 172 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 CHST14Q8NCH0 376 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 FOXB1Q99853 325 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 ZNF747Q9BV97 191 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 OR10A2Q9H208 303 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 C12orf65Q9H3J6 166 aaKnown RBP7.41□□□□□ -1.22
VPS29-212ENST00000621131 TMEM260Q9NX78 707 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 PUF60Q9UHX1 559 aaKnown RBP7.41□□□□□ -1.22
VPS29-212ENST00000621131 SLC30A1Q9Y6M5 507 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 WDR62O43379 1518 aa7.41□□□□□ -1.22
VPS29-212ENST00000621131 AKAP8O43823 692 aaKnown RBP7.4□□□□□ -1.22
VPS29-212ENST00000621131 OPA1O60313 960 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 RFPL3O75679 317 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 COMTP21964 271 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 FNTBP49356 437 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 MEOX1P50221 254 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 HGFACQ04756 655 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 PRKD1Q15139 912 aaPredicted RBP7.4□□□□□ -1.22
VPS29-212ENST00000621131 CRIP3Q6Q6R5 217 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 RTKN2Q8IZC4 609 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 PLA2G12BQ9BX93 195 aa7.4□□□□□ -1.22
VPS29-212ENST00000621131 PTPDC1A2A3K4 754 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 PLSCR1O15162 318 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 AMHP03971 560 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 KIF11P52732 1056 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 MAMDC4Q6UXC1 1216 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 UBXN4Q92575 508 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 ADOQ96SZ5 270 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 PIF1Q9H611 641 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 MSL2Q9HCI7 577 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 ACSS2Q9NR19 701 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 B4GALT6Q9UBX8 382 aa7.39□□□□□ -1.23
VPS29-212ENST00000621131 CCDC88BA6NC98 1476 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 PMS2P1A4D2B8 440 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 ASMTLO95671 621 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 RPS19P39019 145 aaKnown RBP7.38□□□□□ -1.23
VPS29-212ENST00000621131 CDCA2Q69YH5 1023 aaPredicted RBP7.38□□□□□ -1.23
VPS29-212ENST00000621131 POLNQ7Z5Q5 900 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 GPR135Q8IZ08 494 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 SLC16A11Q8NCK7 471 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 MAML3Q96JK9 1138 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 C16orf92Q96LL3 132 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 OR14A2Q96R54 314 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 CABP5Q9NP86 173 aa7.38□□□□□ -1.23
VPS29-212ENST00000621131 PDS5BQ9NTI5 1447 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 CBX4O00257 560 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 FSHBP01225 129 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 PRLP01236 227 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 C6P13671 934 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 ACO1P21399 889 aaKnown RBP7.37□□□□□ -1.23
VPS29-212ENST00000621131 TACR2P21452 398 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 RGS3P49796 1198 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 ANTXR2P58335 489 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 SLC6A3Q01959 620 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 FOXL1Q12952 345 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 PABPC4Q13310 644 aaKnown RBP eCLIP7.37□□□□□ -1.236e-6■■■■■ 28.1
VPS29-212ENST00000621131 PIK3R6Q5UE93 754 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 UBE2R2Q712K3 238 aaPredicted RBP7.37□□□□□ -1.23
VPS29-212ENST00000621131 E2F7Q96AV8 911 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 VPS11Q9H270 941 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 AGO3Q9H9G7 860 aaKnown RBP7.37□□□□□ -1.23
VPS29-212ENST00000621131 VWA7Q9Y334 891 aa7.37□□□□□ -1.23
VPS29-212ENST00000621131 CTDP1Q9Y5B0 961 aaPredicted RBP7.37□□□□□ -1.23
VPS29-212ENST00000621131 MRC2Q9UBG0 1479 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 CYP17A1P05093 508 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 JMJD7P0C870 316 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 MAP3K12Q12852 859 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 KIAA1958Q8N8K9 716 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 OR14K1Q8NGZ2 314 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 RNPC3Q96LT9 517 aaKnown RBP7.36□□□□□ -1.23
VPS29-212ENST00000621131 NELFAQ9H3P2 528 aa7.36□□□□□ -1.23
VPS29-212ENST00000621131 PLA2G3Q9NZ20 509 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms