RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 GPBP1Q86WP2 473 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 DGKHQ86XP1 1220 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 CCDC26Q8TAB7 109 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 RAD54LQ92698 747 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 HOOK2Q96ED9 719 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 XPO6Q96QU8 1125 aaKnown RBP7.54□□□□□ -1.2
NEDD9-216ENST00000620854 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.54□□□□□ -1.28e-8■■□□□ 12.3
NEDD9-216ENST00000620854 TCHPQ9BT92 498 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 ACTR5Q9H9F9 607 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-216ENST00000620854 CD209Q9NNX6 404 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 NAGPAQ9UK23 515 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 PCDHA12Q9UN75 941 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 PCDHGC5Q9Y5F6 944 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 CHD4Q14839 1912 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 TJP1Q07157 1748 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 PKD1L3Q7Z443 1732 aa7.54□□□□□ -1.2
NEDD9-216ENST00000620854 ENO4A6NNW6 628 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 A8MUI8 341 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 RGS16O15492 202 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 RAD17O75943 681 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 SLURP2P0DP57 97 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PCP11498 1178 aaKnown RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 GCKP35557 465 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 USP11P51784 963 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 KCNJ2P63252 427 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ELF3P78545 371 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CYP4A11Q02928 519 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 BYSLQ13895 437 aaKnown RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 GRM4Q14833 912 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ARHGAP44Q17R89 818 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 EXOC3L4Q17RC7 722 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 TMC3Q7Z5M5 1100 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 GLYCTKQ8IVS8 523 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CD302Q8IX05 232 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 FBXO25Q8TCJ0 367 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 TATDN2Q93075 761 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 SPDL1Q96EA4 605 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PLVAPQ9BX97 442 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ZMYND12Q9H0C1 365 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ABCF3Q9NUQ8 709 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 SAMD15Q9P1V8 674 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 IKBKGQ9Y6K9 419 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 LAD1O00515 517 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CETN3O15182 167 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 DIAPH2O60879 1101 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ANP32DO95626 131 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 H2AFZP0C0S5 128 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 UCHL3P15374 230 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 TNFRSF8P28908 595 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PRPHP41219 470 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CASP5P51878 434 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PABPC4Q13310 644 aaKnown RBP eCLIP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CUL1Q13616 776 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 C12orf60Q5U649 245 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 TRIM68Q6AZZ1 485 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 H2AFVQ71UI9 128 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 MREGQ8N565 214 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 GDAP1Q8TB36 358 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 LMBR1Q8WVP7 490 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 RSRC1Q96IZ7 334 aaKnown RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 SEMA4AQ9H3S1 761 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 SH3GLB2Q9NR46 395 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PICK1Q9NRD5 415 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 RASAL2Q9UJF2 1139 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 TRIM33Q9UPN9 1127 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 LAMB4A4D0S4 1761 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CCT8L1PA6NM43 557 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 F8VZ95 297 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ATP6V1G2O95670 118 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 GCFC2P16383 781 aaKnown RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 DRD4P21917 467 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CASP4P49662 377 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 KCNA1Q09470 495 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 BIRC3Q13489 604 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 ZYXQ15942 572 aaKnown RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 LRCH2Q5VUJ6 765 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 DPH6Q7L8W6 267 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 DEFB132Q7Z7B7 95 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CCDC65Q8IXS2 484 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PPP1R14CQ8TAE6 165 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 EPS8L3Q8TE67 593 aaKnown RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CCT6BQ92526 530 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 CEP95Q96GE4 821 aa7.53□□□□□ -1.2
NEDD9-216ENST00000620854 TRIM6Q9C030 488 aaPredicted RBP7.53□□□□□ -1.2
NEDD9-216ENST00000620854 PVALEFA0A1B0GWK0 134 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 TCP10L2B9ZVM9 353 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 LRRN2O75325 713 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 KCNJ1P48048 391 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 CALCOCO2Q13137 446 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 DPY19L2Q6NUT2 758 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 SPICE1Q8N0Z3 855 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 TPCN2Q8NHX9 752 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 SCFD2Q8WU76 684 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 ADAM33Q9BZ11 813 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 NSRP1Q9H0G5 558 aaKnown RBP7.52□□□□□ -1.2
NEDD9-216ENST00000620854 ARMCX3Q9UH62 379 aaPredicted RBP7.52□□□□□ -1.2
NEDD9-216ENST00000620854 TBK1Q9UHD2 729 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 PPP1R9AQ9ULJ8 1098 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 LRP6O75581 1613 aa7.52□□□□□ -1.2
NEDD9-216ENST00000620854 KCPQ6ZWJ8 1503 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms