RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 DENND2CQ68D51 928 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 RASGEF1CQ8N431 466 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 KIAA0895Q8NCT3 520 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 RAB3IPQ96QF0 476 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 TXLNGYQ9BZA5 131 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 TANGO6Q9C0B7 1094 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 DDX47Q9H0S4 455 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 PABPC3Q9H361 631 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 ABCF3Q9NUQ8 709 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 PCDHA4Q9UN74 947 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 PVALEFA0A1B0GWK0 134 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 PP2D1A8MPX8 630 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 EVI5O60447 810 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 HIP1RO75146 1068 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 GCLCP48506 637 aaPredicted RBP11.74□□□□□ -0.53
UPF3A-212ENST00000619079 PPARDQ03181 441 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 THEMIS2Q5TEJ8 643 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 GALNT17Q6IS24 598 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 TMED8Q6PL24 325 aaPredicted RBP11.74□□□□□ -0.53
UPF3A-212ENST00000619079 TAOK1Q7L7X3 1001 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 ERICH1Q86X53 443 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 SRBD1Q8N5C6 995 aaKnown RBP11.74□□□□□ -0.53
UPF3A-212ENST00000619079 FBF1Q8TES7 1133 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 AP1M1Q9BXS5 423 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 TRIM7Q9C029 511 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 RIC8AQ9NPQ8 531 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 ATP8A1Q9Y2Q0 1164 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 MINDY4BA8MYZ0 360 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 TLR2O60603 784 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 NPTXRO95502 500 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 OAS1P00973 400 aaKnown RBP11.74□□□□□ -0.53
UPF3A-212ENST00000619079 SLC5A1P13866 664 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 CNGA1P29973 690 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 KLHL30Q0D2K2 578 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 SYCE1Q8N0S2 351 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 PLIN2Q99541 437 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 ZMYND12Q9H0C1 365 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 NLRC4Q9NPP4 1024 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 AIPL1Q9NZN9 384 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 AMACRQ9UHK6 382 aa11.74□□□□□ -0.53
UPF3A-212ENST00000619079 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.74□□□□□ -0.53
UPF3A-212ENST00000619079 FLT1P17948 1338 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 SNAP23O00161 211 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 SMIM24O75264 130 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 ANXA13P27216 316 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 RASGRF1Q13972 1273 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 LBRQ14739 615 aaKnown RBP11.73□□□□□ -0.53
UPF3A-212ENST00000619079 CLUL1Q15846 466 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 ASIC2Q16515 512 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 SGSM1Q2NKQ1 1148 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 BTNL9Q6UXG8 535 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 GALNT15Q8N3T1 639 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 PRMT1Q99873 361 aaKnown RBP11.73□□□□□ -0.53
UPF3A-212ENST00000619079 ZNF277Q9NRM2 450 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-212ENST00000619079 SUCLA2Q9P2R7 463 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-212ENST00000619079 CTNNAL1Q9UBT7 734 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 CNOT7Q9UIV1 285 aaKnown RBP11.73□□□□□ -0.53
UPF3A-212ENST00000619079 BZW2Q9Y6E2 419 aaKnown RBP11.73□□□□□ -0.53
UPF3A-212ENST00000619079 DUOX1Q9NRD9 1551 aa11.73□□□□□ -0.53
UPF3A-212ENST00000619079 A0A087X0T9 212 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 G3V3G9 751 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 RIMBP2O15034 1052 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 FAM228BP0C875 321 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ATP2B4P23634 1241 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 DCAF8Q5TAQ9 597 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 LRRC55Q6ZSA7 311 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 UNC13DQ70J99 1090 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 LRRC57Q8N9N7 239 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 DRAXINQ8NBI3 349 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 SUPT20HQ8NEM7 779 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 GPR101Q96P66 508 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 TMEM109Q9BVC6 243 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ADAM7Q9H2U9 754 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ADAM22Q9P0K1 906 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 LRRC42Q9Y546 428 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 BRCA1P38398 1863 aaKnown RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ZNF804BA4D1E1 1349 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ARAP2Q8WZ64 1704 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 NKRFO15226 690 aaKnown RBP eCLIP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 TTI1O43156 1089 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 KRT16P08779 473 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ABL2P42684 1182 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 PMS2P54278 862 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 MXRA7P84157 204 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 KCNMA1Q12791 1236 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 RAPGEF1Q13905 1077 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ASRGL1Q7L266 308 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 APBB1IPQ7Z5R6 666 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 METTL13Q8N6R0 699 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 TBC1D16Q8TBP0 767 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 CALML4Q96GE6 196 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 NAP1L3Q99457 506 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 EYA3Q99504 573 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ZC3H12CQ9C0D7 883 aaKnown RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 RXFP1Q9HBX9 757 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 POLLQ9UGP5 575 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 ADAMTS1Q9UHI8 967 aa11.72□□□□□ -0.53
UPF3A-212ENST00000619079 TTC7AQ9ULT0 858 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-212ENST00000619079 DIS3Q9Y2L1 958 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms