RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 TRIM59Q8IWR1 403 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 ANKRD42Q8N9B4 389 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 MRRFQ96E11 262 aaKnown RBP9.4□□□□□ -0.9
LIG4-204ENST00000611712 INTS2Q9H0H0 1204 aaKnown RBP9.4□□□□□ -0.9
LIG4-204ENST00000611712 PRR12Q9ULL5 1215 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 EVI5O60447 810 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 IFNAR2P48551 515 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 GUCY1A3Q02108 690 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 CEP55Q53EZ4 464 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 GJB7Q6PEY0 223 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 FAM160B2Q86V87 743 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 CREG2Q8IUH2 290 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 KSR1Q8IVT5 923 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 RHOT2Q8IXI1 618 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 SYT2Q8N9I0 419 aaPredicted RBP9.4□□□□□ -0.9
LIG4-204ENST00000611712 VTI1AQ96AJ9 217 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 LXNQ9BS40 222 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 STK32BQ9NY57 414 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 SEL1LQ9UBV2 794 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 CEP83Q9Y592 693 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 PASKQ96RG2 1323 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 DESP17661 470 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 SHMT1P34896 483 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 SLCO1A2P46721 670 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 TMEM119Q4V9L6 283 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 DDX42Q86XP3 938 aaKnown RBP eCLIP9.4□□□□□ -0.91
LIG4-204ENST00000611712 DNAAF5Q86Y56 855 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 RFFLQ8WZ73 363 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 ATP6V1G3Q96LB4 118 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 SH2D3AQ9BRG2 576 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 TLR10Q9BXR5 811 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 PICK1Q9NRD5 415 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 FEZ2Q9UHY8 353 aaPredicted RBP9.4□□□□□ -0.91
LIG4-204ENST00000611712 NAGPAQ9UK23 515 aa9.4□□□□□ -0.91
LIG4-204ENST00000611712 FANCGO15287 622 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 CTNND1O60716 968 aaKnown RBP9.39□□□□□ -0.91
LIG4-204ENST00000611712 ADCY8P40145 1251 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 CASP4P49662 377 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 LIG4P49917 911 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 PSMC6P62333 389 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 SNX1Q13596 522 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 DPH6Q7L8W6 267 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 TADA2BQ86TJ2 420 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 USP38Q8NB14 1042 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 NEK9Q8TD19 979 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 FBXL5Q9UKA1 691 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 GJA3Q9Y6H8 435 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 MYO1FO00160 1098 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 SLC16A3O15427 465 aaKnown RBP9.39□□□□□ -0.91
LIG4-204ENST00000611712 MSH4O15457 936 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 C21orf2O43822 256 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 FTLP02792 175 aaPredicted RBP9.39□□□□□ -0.91
LIG4-204ENST00000611712 GIT2Q14161 759 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 STRIP1Q5VSL9 837 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 LRRC31Q6UY01 552 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 ARHGAP27Q6ZUM4 889 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 PHLDB2Q86SQ0 1253 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 XXYLT1Q8NBI6 393 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 RUSC1Q9BVN2 902 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 KMT5AQ9NQR1 393 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 IKBKGQ9Y6K9 419 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 SLURP2P0DP57 97 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 EZRP15311 586 aaKnown RBP9.39□□□□□ -0.91
LIG4-204ENST00000611712 HSPA6P17066 643 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 PON1P27169 355 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 TM4SF1P30408 202 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 FMO5P49326 533 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 DCUN1D2Q6PH85 259 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 LRRC55Q6ZSA7 311 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 PNMA8AQ86V59 439 aaPredicted RBP9.39□□□□□ -0.91
LIG4-204ENST00000611712 MAIP1Q8WWC4 291 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 CEP170P1Q96L14 293 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 ZNF341Q9BYN7 854 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 TUFT1Q9NNX1 390 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 HOMER3Q9NSC5 361 aa9.39□□□□□ -0.91
LIG4-204ENST00000611712 INTS9Q9NV88 658 aaKnown RBP9.39□□□□□ -0.91
LIG4-204ENST00000611712 TTI1O43156 1089 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 HIP1RO75146 1068 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 MAPK4P31152 587 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 VAMP7P51809 220 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 RPUSD2Q8IZ73 545 aaKnown RBP9.38□□□□□ -0.91
LIG4-204ENST00000611712 HAS1Q92839 578 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 ARL8AQ96BM9 186 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 STK33Q9BYT3 514 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 CRYBG1Q9Y4K1 1723 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 EMSYQ7Z589 1322 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 DDTLA6NHG4 134 aaPredicted RBP9.38□□□□□ -0.91
LIG4-204ENST00000611712 EIF3HO15372 352 aaKnown RBP eCLIP9.38□□□□□ -0.916e-6■■■□□ 15.8
LIG4-204ENST00000611712 SLC16A4O15374 487 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 SLC26A4O43511 780 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 AKAP3O75969 853 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 GLI1P08151 1106 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 NSFP46459 744 aaKnown RBP9.38□□□□□ -0.91
LIG4-204ENST00000611712 MAGOHP61326 146 aaKnown RBP9.38□□□□□ -0.91
LIG4-204ENST00000611712 DEPTORQ8TB45 409 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 SLC35G2Q8TBE7 412 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 RNPC3Q96LT9 517 aaKnown RBP9.38□□□□□ -0.91
LIG4-204ENST00000611712 SLITRK6Q9H5Y7 841 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 TMOD4Q9NZQ9 345 aa9.38□□□□□ -0.91
LIG4-204ENST00000611712 ZSCAN5CA6NGD5 496 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms