RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 RARRES1P49788 294 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 SLC39A14Q15043 492 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 KIZQ2M2Z5 673 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 PLEKHG4Q58EX7 1191 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 FBXO47Q5MNV8 452 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 NME8Q8N427 588 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 SNX29Q8TEQ0 813 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 CLIC6Q96NY7 704 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 DAXXQ9UER7 740 aaPredicted RBP15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 KIAA1024Q9UPX6 916 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 TRPV2Q9Y5S1 764 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 GRXCR1A8MXD5 290 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 XRCC6P12956 609 aaKnown RBP eCLIP15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 NASPP49321 788 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 GRB10Q13322 594 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 SPECC1Q5M775 1068 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 PSRC1Q6PGN9 363 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 OTUD6AQ7L8S5 288 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 RSPH3Q86UC2 560 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 KSR1Q8IVT5 923 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 LINC00301Q8NCQ3 95 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 ERMNQ8TAM6 284 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 TMEM143Q96AN5 459 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 RNPC3Q96LT9 517 aaKnown RBP15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 PLIN2Q99541 437 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 SCN5AQ14524 2016 aa15.87■□□□□ 0.13
SHKBP1-217ENST00000598558 A0A1W2PPC1 479 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 E9PMD0 336 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 PARNO95453 639 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 BMP15O95972 392 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 CD52P31358 61 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 NLRP11P59045 1033 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 DNM1Q05193 864 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 IER5Q5VY09 327 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 NACC1Q96RE7 527 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 CSRNP2Q9H175 543 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 POLD4Q9HCU8 107 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 DDX19AQ9NUU7 478 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 SUCLA2Q9P2R7 463 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 DBR1Q9UK59 544 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 AKT3Q9Y243 479 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 GINS2Q9Y248 185 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 NOC2LQ9Y3T9 749 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 SRPRBQ9Y5M8 271 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 KDM3AQ9Y4C1 1321 aa15.86■□□□□ 0.13
SHKBP1-217ENST00000598558 CSDE1O75534 798 aaKnown RBP15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 PFKMP08237 780 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 GPC3P51654 580 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 EMC2Q15006 297 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 LRIT3Q3SXY7 679 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 HYIQ5T013 277 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 KRT79Q5XKE5 535 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 CNKSR3Q6P9H4 555 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 TMCO2Q7Z6W1 182 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 RTN4RL1Q86UN2 441 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 PRPF31Q8WWY3 499 aaKnown RBP15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 LRCH3Q96II8 777 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 EPSTI1Q96J88 318 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 OSMRQ99650 979 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 GPRC5CQ9NQ84 441 aa15.85■□□□□ 0.13
SHKBP1-217ENST00000598558 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 PDIA4P13667 645 aaKnown RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 MUTP22033 750 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 TMOD1P28289 359 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 RFC5P40937 340 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 CRYBB1P53674 252 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 POLGP54098 1239 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 DEFB103AP81534 67 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 ZRSR1Q15695 479 aaKnown RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 TMEM119Q4V9L6 283 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 HAUS3Q68CZ6 603 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 MAEAQ7L5Y9 396 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 CABP7Q86V35 215 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 ASAP3Q8TDY4 903 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 LINC01599Q8WXQ3 324 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 ZNF396Q96N95 335 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 RAB34Q9BZG1 259 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 BHMT2Q9H2M3 363 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 TMX1Q9H3N1 280 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 PADI3Q9ULW8 664 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 PPME1Q9Y570 386 aa15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 MORC2Q9Y6X9 1032 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-217ENST00000598558 TET1Q8NFU7 2136 aa15.83■□□□□ 0.13
SHKBP1-217ENST00000598558 A0A087WZ62 844 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 ZBBXA8MT70 800 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 USO1O60763 962 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 FGFR4P22455 802 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 ARL2P36404 184 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 LONP1P36776 959 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 FXR1P51114 621 aaKnown RBP eCLIP15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 WDR5P61964 334 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 KARSQ15046 597 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 TSHZ1Q6ZSZ6 1077 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 FAM228AQ86W67 206 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 RHPN2Q8IUC4 686 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 SLC7A3Q8WY07 619 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 SEPT8Q92599 483 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 MAP7D2Q96T17 732 aa15.83■□□□□ 0.12
SHKBP1-217ENST00000598558 FDXACB1Q9BRP7 624 aaPredicted RBP15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms