RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 H3BRB1 525 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 C6orf222P0C671 652 aaPredicted RBP17.11■□□□□ 0.33
UPF1-206ENST00000598471 BMP6P22004 513 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 CCND3P30281 292 aaPredicted RBP17.11■□□□□ 0.33
UPF1-206ENST00000598471 ZNF131P52739 623 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 TBC1D8BQ0IIM8 1120 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 EMC2Q15006 297 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 ZNF484Q5JVG2 852 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 STXBP4Q6ZWJ1 553 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 MYCT1Q8N699 235 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 SH2D3AQ9BRG2 576 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 C16orf70Q9BSU1 422 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 TUT1Q9H6E5 874 aaKnown RBP17.11■□□□□ 0.33
UPF1-206ENST00000598471 HMX1Q9NP08 348 aaPredicted RBP17.11■□□□□ 0.33
UPF1-206ENST00000598471 XPNPEP3Q9NQH7 507 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 LARSQ9P2J5 1176 aaKnown RBP17.11■□□□□ 0.33
UPF1-206ENST00000598471 COL1A2P08123 1366 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 WDR81Q562E7 1941 aa17.11■□□□□ 0.33
UPF1-206ENST00000598471 BECN2A8MW95 431 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 PSMA7O14818 248 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 GAS2O43903 313 aaKnown RBP17.1■□□□□ 0.33
UPF1-206ENST00000598471 F2P00734 622 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 MYL3P08590 195 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 ERCC5P28715 1186 aaPredicted RBP17.1■□□□□ 0.33
UPF1-206ENST00000598471 EHHADHQ08426 723 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 TARBP2Q15633 366 aaKnown RBP17.1■□□□□ 0.33
UPF1-206ENST00000598471 COBLL1Q53SF7 1204 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 FAM102BQ5T8I3 360 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 SFR1Q86XK3 245 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 RNF214Q8ND24 703 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 SLC17A8Q8NDX2 589 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 ABHD8Q96I13 439 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 C17orf75Q9HAS0 396 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 CBX8Q9HC52 389 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 SLC39A2Q9NP94 309 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 OLFML3Q9NRN5 406 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 DDX20Q9UHI6 824 aaKnown RBP17.1■□□□□ 0.33
UPF1-206ENST00000598471 KCNG1Q9UIX4 513 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 GDAQ9Y2T3 454 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 SYNRGQ9UMZ2 1314 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 ARID2Q68CP9 1835 aa17.1■□□□□ 0.33
UPF1-206ENST00000598471 SMTNL1A8MU46 457 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 RSPH10B2B2RC85 870 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 GOLGA6L19H0YKK7 550 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 RSPH10BP0C881 870 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 TPM4P67936 248 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 NKX3-2P78367 333 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 BEX3Q00994 111 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 STK4Q13043 487 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 GNASQ5JWF2 1037 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 ODR4Q5SWX8 454 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 L1TD1Q5T7N2 865 aaKnown RBP17.09■□□□□ 0.33
UPF1-206ENST00000598471 MAEAQ7L5Y9 396 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 SMYD4Q8IYR2 804 aaPredicted RBP17.09■□□□□ 0.33
UPF1-206ENST00000598471 RBSNQ9H1K0 784 aa17.09■□□□□ 0.33
UPF1-206ENST00000598471 DHX33Q9H6R0 707 aaKnown RBP17.09■□□□□ 0.33
UPF1-206ENST00000598471 MRPL44Q9H9J2 332 aaKnown RBP17.09■□□□□ 0.33
UPF1-206ENST00000598471 RRN3P2A6NIE6 340 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 PPP1R3GB7ZBB8 358 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 MAFO75444 373 aaPredicted RBP17.08■□□□□ 0.32
UPF1-206ENST00000598471 MAPTP10636 758 aaKnown RBP17.08■□□□□ 0.32
UPF1-206ENST00000598471 PLS3P13797 630 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 RTP1P59025 263 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 PPFIA1Q13136 1202 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 PAK1Q13153 545 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 MAPK7Q13164 816 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 KLHL10Q6JEL2 608 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 FAM178BQ8IXR5 827 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 MYOCDQ8IZQ8 938 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 ADSSL1Q8N142 457 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 GUF1Q8N442 669 aaKnown RBP17.08■□□□□ 0.32
UPF1-206ENST00000598471 RETREG2Q8NC44 543 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 SH3TC2Q8TF17 1288 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 TCP11Q8WWU5 503 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 DHTKD1Q96HY7 919 aaPredicted RBP17.08■□□□□ 0.32
UPF1-206ENST00000598471 IFT74Q96LB3 600 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 MTG1Q9BT17 334 aaPredicted RBP17.08■□□□□ 0.32
UPF1-206ENST00000598471 RNPEPQ9H4A4 650 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 PDLIM7Q9NR12 457 aa17.08■□□□□ 0.32
UPF1-206ENST00000598471 UBE4BO95155 1302 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 BICDL2A1A5D9 508 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 FSD2A1L4K1 749 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 SFI1A8K8P3 1242 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 IKBKBO14920 756 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 MAGEB2O15479 319 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 PGK1P00558 417 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 INSRRP14616 1297 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 CD44P16070 742 aaKnown RBP17.07■□□□□ 0.32
UPF1-206ENST00000598471 CST5P28325 142 aaPredicted RBP17.07■□□□□ 0.32
UPF1-206ENST00000598471 PRCPP42785 496 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 PSEN2P49810 448 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 SMTNP53814 917 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 MYL5Q02045 173 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 DMP1Q13316 513 aaPredicted RBP17.07■□□□□ 0.32
UPF1-206ENST00000598471 ALCAMQ13740 583 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 MFSD10Q14728 455 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 PPP2R5AQ15172 486 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 SLC9C1Q4G0N8 1177 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 RNF180Q86T96 592 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 DAW1Q8N136 415 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms