RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 FAM49AQ9H0Q0 323 aaPredicted RBP11.83□□□□□ -0.52
VPS4B-207ENST00000591519 COL1A2P08123 1366 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 NID2Q14112 1375 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 IPO5O00410 1097 aaKnown RBP11.82□□□□□ -0.52
VPS4B-207ENST00000591519 GRM6O15303 877 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 STAG3L1P0CL83 205 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 ATP4AP20648 1035 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 CIITAP33076 1130 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 CTNNB1P35222 781 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 ZNF76P36508 570 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 LTBRP36941 435 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 METAP2P50579 478 aaKnown RBP eCLIP11.82□□□□□ -0.52
VPS4B-207ENST00000591519 EVCP57679 992 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 KRT76Q01546 638 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 BTG3Q14201 252 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-207ENST00000591519 ZNF484Q5JVG2 852 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 JAKMIP3Q5VZ66 844 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 FAM160B1Q5W0V3 765 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 Q6ZUG5 572 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 PLA2G4DQ86XP0 818 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 NPAS4Q8IUM7 802 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 CMTR2Q8IYT2 770 aaKnown RBP11.82□□□□□ -0.52
VPS4B-207ENST00000591519 KIAA0319LQ8IZA0 1049 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 GJD3Q8N144 294 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 TRAPPC12Q8WVT3 735 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 LRFN3Q9BTN0 628 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 TBC1D22BQ9NU19 505 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 PLAGL2Q9UPG8 496 aa11.82□□□□□ -0.52
VPS4B-207ENST00000591519 MAFBQ9Y5Q3 323 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-207ENST00000591519 ZBTB42B2RXF5 422 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 ADAMTS3O15072 1205 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 IL9P15248 144 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 GNA11P29992 359 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 TMEM62Q0P6H9 643 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 APOBRQ0VD83 1088 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 CAMK1Q14012 370 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 NTRK3Q16288 839 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 TMEM31Q5JXX7 168 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 ZNF746Q6NUN9 644 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-207ENST00000591519 SWSAP1Q6NVH7 229 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 MIS18BP1Q6P0N0 1132 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 PDXDC2PQ6P474 469 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 CCDC60Q8IWA6 550 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-207ENST00000591519 CCDC12Q8WUD4 166 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-207ENST00000591519 BRF1Q92994 677 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 TMX1Q9H3N1 280 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 C6orf50Q9HD87 102 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 ERVK-5Q9HDB9 667 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 ZNF302Q9NR11 478 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 PRKAG3Q9UGI9 489 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 RAPGEFL1Q9UHV5 662 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 SNX14Q9Y5W7 946 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 LOXHD1Q8IVV2 1947 aa11.81□□□□□ -0.52
VPS4B-207ENST00000591519 H3BQ06 376 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-207ENST00000591519 BACH1O14867 736 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 MMP1P03956 469 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 CPA1P15085 419 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 FAM189BP81408 668 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 FGD1P98174 961 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 SETQ01105 290 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-207ENST00000591519 HYAL1Q12794 435 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 PAK2Q13177 524 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 ODR4Q5SWX8 454 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 BLOC1S2Q6QNY1 142 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 NYAP1Q6ZVC0 841 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 SMAP1Q8IYB5 467 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-207ENST00000591519 REXO1Q8N1G1 1221 aaKnown RBP11.8□□□□□ -0.52
VPS4B-207ENST00000591519 SPPL3Q8TCT6 385 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 ZNF577Q9BSK1 485 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 RNF26Q9BY78 433 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-207ENST00000591519 CDHR5Q9HBB8 845 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 C11orf16Q9NQ32 467 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 RGS18Q9NS28 235 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 FAM50BQ9Y247 325 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 PCDHA10Q9Y5I2 948 aa11.8□□□□□ -0.52
VPS4B-207ENST00000591519 MRPL42Q9Y6G3 142 aaKnown RBP11.8□□□□□ -0.52
VPS4B-207ENST00000591519 EVPLQ92817 2033 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 DDX39AO00148 427 aaKnown RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 SMAPO00193 183 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 GPR182O15218 404 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 EPB41L2O43491 1005 aaKnown RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 EDIL3O43854 480 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 IFNAR1P17181 557 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 RPS6KB1P23443 525 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 SARSP49591 514 aaKnown RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 USP11P51784 963 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 CRYBB1P53674 252 aaPredicted RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 NFX1Q12986 1120 aaKnown RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 ADAM15Q13444 863 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 SLC24A5Q71RS6 500 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 SPRYD3Q8NCJ5 442 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 BICD2Q8TD16 824 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 TMEM40Q8WWA1 233 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 LENG9Q96B70 501 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 JAKMIP1Q96N16 626 aaKnown RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 ALG13Q9NP73 1137 aaKnown RBP11.79□□□□□ -0.52
VPS4B-207ENST00000591519 SH3GLB2Q9NR46 395 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 C1orf112Q9NSG2 853 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 CLDND1Q9NY35 253 aa11.79□□□□□ -0.52
VPS4B-207ENST00000591519 TSR3Q9UJK0 312 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms