RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 MRE11P49959 708 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 SLC26A2P50443 739 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 FAM189BP81408 668 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 COASYQ13057 564 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 AP3B2Q13367 1082 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 PFKFB3Q16875 520 aaPredicted RBP13.2□□□□□ -0.3
LIG3-207ENST00000586119 TSGA10IPQ3SY00 556 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 MIS18BP1Q6P0N0 1132 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 SLC24A5Q71RS6 500 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 NIPA1Q7RTP0 329 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 METTL13Q8N6R0 699 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 COLGALT1Q8NBJ5 622 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 RPGRIP1Q96KN7 1286 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 ZNF577Q9BSK1 485 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 GABBR1Q9UBS5 961 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 CDH22Q9UJ99 828 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 PCDHB12Q9Y5F1 795 aa13.2□□□□□ -0.3
LIG3-207ENST00000586119 MAFBQ9Y5Q3 323 aaPredicted RBP13.2□□□□□ -0.3
LIG3-207ENST00000586119 FSCN2O14926 492 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 GPR182O15218 404 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 FGFR4P22455 802 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 CRYBB1P53674 252 aaPredicted RBP13.19□□□□□ -0.3
LIG3-207ENST00000586119 DUSP6Q16828 381 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 PRR16Q569H4 304 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 RNF20Q5VTR2 975 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 PLPP4Q5VZY2 271 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 Q6ZUG5 572 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 THNSL1Q8IYQ7 743 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 LRRC71Q8N4P6 559 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 PHKBQ93100 1093 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 CASD1Q96PB1 797 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 POP1Q99575 1024 aaKnown RBP13.19□□□□□ -0.3
LIG3-207ENST00000586119 TLR9Q9NR96 1032 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 C1orf112Q9NSG2 853 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 PIEZO1Q92508 2521 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 COL1A2P08123 1366 aa13.19□□□□□ -0.3
LIG3-207ENST00000586119 TMEM221A6NGB7 291 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 HIDE1A8MVS5 230 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 M0R296 226 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 ZNF862O60290 1169 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 CSDE1O75534 798 aaKnown RBP13.18□□□□□ -0.3
LIG3-207ENST00000586119 NLRP11P59045 1033 aaKnown RBP13.18□□□□□ -0.3
LIG3-207ENST00000586119 ZXDAP98168 799 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 EFCAB12Q6NXP0 572 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 LLGL2Q6P1M3 1020 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 SYCE2Q6PIF2 218 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 TRIM67Q6ZTA4 783 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 LINC01465Q8N7H1 131 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 PRSS33Q8NF86 280 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 BBXQ8WY36 941 aaPredicted RBP13.18□□□□□ -0.3
LIG3-207ENST00000586119 PPP2R3CQ969Q6 453 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 LENG9Q96B70 501 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 ZMYND12Q9H0C1 365 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 S1PR5Q9H228 398 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 ADAMTS10Q9H324 1103 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 ATP6V0A4Q9HBG4 840 aa13.18□□□□□ -0.3
LIG3-207ENST00000586119 hCG_1984214I3L0E3 225 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 SP100P23497 879 aaPredicted RBP13.17□□□□□ -0.3
LIG3-207ENST00000586119 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG3-207ENST00000586119 DRP2Q13474 957 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 KCNC3Q14003 757 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 CBX2Q14781 532 aaPredicted RBP13.17□□□□□ -0.3
LIG3-207ENST00000586119 UGCGQ16739 394 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 BMP2KLQ5H9B9 411 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 ZNF746Q6NUN9 644 aaPredicted RBP13.17□□□□□ -0.3
LIG3-207ENST00000586119 ZNF713Q8N859 430 aaPredicted RBP13.17□□□□□ -0.3
LIG3-207ENST00000586119 FEZF2Q8TBJ5 459 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 SUSD6Q92537 303 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 BRF1Q92994 677 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 PBXIP1Q96AQ6 731 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 MFSD14AQ96MC6 490 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 PHF7Q9BWX1 381 aaPredicted RBP13.17□□□□□ -0.3
LIG3-207ENST00000586119 TBC1D22BQ9NU19 505 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 TMEM161AQ9NX61 479 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 PCDHA10Q9Y5I2 948 aa13.17□□□□□ -0.3
LIG3-207ENST00000586119 TMEM150BA6NC51 233 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 NT5C1B-RDH14C9J2C7 533 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 MSH4O15457 936 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 PRPF3O43395 683 aaKnown RBP13.16□□□□□ -0.3
LIG3-207ENST00000586119 PSAPP07602 524 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 TECP42680 631 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 UBE3AQ05086 875 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 CLLU1OSQ5K130 101 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 KANK3Q6NY19 840 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 KCNT2Q6UVM3 1135 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 ECHDC2Q86YB7 292 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 RNF169Q8NCN4 708 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 MRPS27Q92552 414 aaKnown RBP13.16□□□□□ -0.3
LIG3-207ENST00000586119 JAKMIP1Q96N16 626 aaKnown RBP13.16□□□□□ -0.3
LIG3-207ENST00000586119 SH2D3AQ9BRG2 576 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 GLT8D2Q9H1C3 349 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 ELAC1Q9H777 363 aaKnown RBP13.16□□□□□ -0.3
LIG3-207ENST00000586119 C6orf50Q9HD87 102 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 AAASQ9NRG9 546 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 VPS54Q9P1Q0 977 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 AKT3Q9Y243 479 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 SAMM50Q9Y512 469 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 ZDBF2Q9HCK1 2354 aa13.16□□□□□ -0.3
LIG3-207ENST00000586119 ESYT2A0FGR8 921 aa13.15□□□□□ -0.3
LIG3-207ENST00000586119 CHMP2AO43633 222 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms