RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 SGMS1Q86VZ5 419 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 APOL5Q9BWW9 433 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 ANO3Q9BYT9 981 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 ATP6V0A4Q9HBG4 840 aa24.82■■□□□ 1.56
SHMT1-210ENST00000583780 RNF216Q9NWF9 866 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-210ENST00000583780 DDX39AO00148 427 aaKnown RBP24.81■■□□□ 1.56
SHMT1-210ENST00000583780 SLC27A2O14975 620 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 NECTIN1Q15223 517 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 KIZQ2M2Z5 673 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 ODR4Q5SWX8 454 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 PLPP4Q5VZY2 271 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 SWSAP1Q6NVH7 229 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 RIPOR3Q96MK2 946 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 CASD1Q96PB1 797 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 PPP1R16BQ96T49 567 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 OSMRQ99650 979 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 CNTNAP5Q8WYK1 1306 aa24.81■■□□□ 1.56
SHMT1-210ENST00000583780 BACH1O14867 736 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 C22orf31O95567 290 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 LAG3P18627 525 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 SREBF1P36956 1147 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 CLK2P49760 499 aaKnown RBP24.8■■□□□ 1.56
SHMT1-210ENST00000583780 FAM160B1Q5W0V3 765 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 NIPA1Q7RTP0 329 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 TEX2Q8IWB9 1127 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 TCF25Q9BQ70 676 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 ZNF302Q9NR11 478 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 CDH22Q9UJ99 828 aa24.8■■□□□ 1.56
SHMT1-210ENST00000583780 FAM86B1E9PN63 330 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 GFRA3O60609 400 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 FAM86B2P0C5J1 330 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 NAPAP54920 295 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 LLGL2Q6P1M3 1020 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 PDXDC2PQ6P474 469 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 KCNT2Q6UVM3 1135 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 MICU3Q86XE3 530 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 CRYGNQ8WXF5 182 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 TMEM117Q9H0C3 514 aa24.79■■□□□ 1.56
SHMT1-210ENST00000583780 PUF60Q9UHX1 559 aaKnown RBP24.79■■□□□ 1.56
SHMT1-210ENST00000583780 MAFBQ9Y5Q3 323 aaPredicted RBP24.79■■□□□ 1.56
SHMT1-210ENST00000583780 V9GY48 417 aaPredicted RBP24.79■■□□□ 1.56
SHMT1-210ENST00000583780 IGLV3-22A0A075B6J6 115 aa24.78■■□□□ 1.56
SHMT1-210ENST00000583780 SMCO2A6NFE2 343 aa24.78■■□□□ 1.56
SHMT1-210ENST00000583780 VTNP04004 478 aa24.78■■□□□ 1.56
SHMT1-210ENST00000583780 HOXB8P17481 243 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-210ENST00000583780 ATOH1Q92858 354 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-210ENST00000583780 NGRNQ9NPE2 291 aaKnown RBP24.78■■□□□ 1.56
SHMT1-210ENST00000583780 H0Y858 1186 aa24.77■■□□□ 1.56
SHMT1-210ENST00000583780 SP100P23497 879 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-210ENST00000583780 PBX3P40426 434 aa24.77■■□□□ 1.56
SHMT1-210ENST00000583780 CREB3L3Q68CJ9 461 aa24.77■■□□□ 1.56
SHMT1-210ENST00000583780 BBXQ8WY36 941 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-210ENST00000583780 MYO15AQ9UKN7 3530 aa24.77■■□□□ 1.56
SHMT1-210ENST00000583780 SPTBN4Q9H254 2564 aa24.77■■□□□ 1.56
SHMT1-210ENST00000583780 RIF1Q5UIP0 2472 aaKnown RBP24.76■■□□□ 1.55
SHMT1-210ENST00000583780 ADAMTS3O15072 1205 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 SRGAP2BP0DMP2 458 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 ZNF76P36508 570 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 ADCY7P51828 1080 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 PPP1R18Q6NYC8 613 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 MIS18BP1Q6P0N0 1132 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 PLA2G4DQ86XP0 818 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 KREMEN2Q8NCW0 462 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 IRF2BPLQ9H1B7 796 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 ADAMTS10Q9H324 1103 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 ENTPD7Q9NQZ7 604 aa24.76■■□□□ 1.55
SHMT1-210ENST00000583780 NUBP1P53384 320 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 AP3B2Q13367 1082 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 APOA5Q6Q788 366 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 METTL13Q8N6R0 699 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 LINC01465Q8N7H1 131 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 MRPL43Q8N983 215 aaKnown RBP24.75■■□□□ 1.55
SHMT1-210ENST00000583780 FAM217BQ9NTX9 383 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-210ENST00000583780 BARHL2Q9NY43 387 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 BRPF3Q9ULD4 1205 aa24.75■■□□□ 1.55
SHMT1-210ENST00000583780 PROB1E7EW31 1015 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 IPO5O00410 1097 aaKnown RBP24.74■■□□□ 1.55
SHMT1-210ENST00000583780 CENPBP07199 599 aaPredicted RBP24.74■■□□□ 1.55
SHMT1-210ENST00000583780 CYP3A4P08684 503 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 TRMT1LQ7Z2T5 733 aaKnown RBP24.74■■□□□ 1.55
SHMT1-210ENST00000583780 TMC7Q7Z402 723 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 ECHDC2Q86YB7 292 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 ZNF558Q96NG5 402 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 ADAM7Q9H2U9 754 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 POMKQ9H5K3 350 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 RBM28Q9NW13 759 aaKnown RBP24.74■■□□□ 1.55
SHMT1-210ENST00000583780 SPG21Q9NZD8 308 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 HCFC2Q9Y5Z7 792 aa24.74■■□□□ 1.55
SHMT1-210ENST00000583780 C2orf71A6NGG8 1288 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 C2CD4DB7Z1M9 353 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 BRD1O95696 1058 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 NLRP11P59045 1033 aaKnown RBP24.73■■□□□ 1.55
SHMT1-210ENST00000583780 EXOSC10Q01780 885 aaKnown RBP24.73■■□□□ 1.55
SHMT1-210ENST00000583780 KRT17Q04695 432 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 CLLU1OSQ5K130 101 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 JAKMIP3Q5VZ66 844 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 CASP10Q92851 521 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 SMOC2Q9H3U7 446 aa24.73■■□□□ 1.55
SHMT1-210ENST00000583780 HOXA2O43364 376 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 GALR2O43603 387 aaPredicted RBP24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms