RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SWT1Q5T5J6 900 aaKnown RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 IER5Q5VY09 327 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 TRAF7Q6Q0C0 670 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 NEK8Q86SG6 692 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 RPAINQ86UA6 219 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 CCDC60Q8IWA6 550 aaPredicted RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 NSUN7Q8NE18 718 aaKnown RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 SLC5A5Q92911 643 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 LENG9Q96B70 501 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 ASB2Q96Q27 587 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 GAS2L1Q99501 681 aaPredicted RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 PRDM12Q9H4Q4 367 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 SH2B1Q9NRF2 756 aaPredicted RBP9.14□□□□□ -0.95
VPS53-214ENST00000572607 DISC1Q9NRI5 854 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 GABBR1Q9UBS5 961 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 TANC1Q9C0D5 1861 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 SCN5AQ14524 2016 aa9.14□□□□□ -0.95
VPS53-214ENST00000572607 PRRC2BQ5JSZ5 2229 aaKnown RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 MYH7BA7E2Y1 1941 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 CYP3A7-CYP3A51PA0A087WV96 503 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 SMIM35A0A1B0GVV1 85 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 MBLAC1A4D2B0 266 aaPredicted RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 M0R2N6 131 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 TLL1O43897 1013 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 CCNT1O60563 726 aaKnown RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 LARGE1O95461 756 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 CYP3A7P24462 503 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 MRPS6P82932 125 aaKnown RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 MBTPS1Q14703 1052 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 RABEP1Q15276 862 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 FAM26DQ5JW98 314 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 MTHFD1LQ6UB35 978 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 RUFY4Q6ZNE9 571 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 PIK3AP1Q6ZUJ8 805 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 MIER3Q7Z3K6 550 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 CCDC83Q8IWF9 413 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 NME8Q8N427 588 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 FAM184AQ8NB25 1140 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 IL27Q8NEV9 243 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 DBF4BQ8NFT6 615 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 RDM1Q8NG50 284 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 ADAMTS19Q8TE59 1207 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 DNAJB3Q8WWF6 145 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 ATXN2LQ8WWM7 1075 aaKnown RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 NECAB3Q96P71 396 aaPredicted RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 LLPHQ9BRT6 129 aaKnown RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 IFIH1Q9BYX4 1025 aaKnown RBP9.13□□□□□ -0.95
VPS53-214ENST00000572607 NRBP2Q9NSY0 501 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 PCDHA2Q9Y5H9 948 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 TRPV2Q9Y5S1 764 aa9.13□□□□□ -0.95
VPS53-214ENST00000572607 LCE2BO14633 110 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 MAGEB2O15479 319 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 JAK2O60674 1132 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 DKC1O60832 514 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS53-214ENST00000572607 BAG4O95429 457 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 MMP1P03956 469 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 CA3P07451 260 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 GHRP10912 638 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 FDPSP14324 419 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 KLRC1P26715 233 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 RBM25P49756 843 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 HMGN5P82970 282 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 GNL2Q13823 731 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 GPNMBQ14956 572 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 NPY5RQ15761 445 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 PLEKHG4Q58EX7 1191 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 MARCH8Q5T0T0 291 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 PPP4R3AQ6IN85 833 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 TRMT1LQ7Z2T5 733 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 DIS3L2Q8IYB7 885 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 MYOCDQ8IZQ8 938 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 TRAPPC12Q8WVT3 735 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 C8orf76Q96K31 380 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 MBOAT7Q96N66 472 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 UNC45AQ9H3U1 944 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 GJB4Q9NTQ9 266 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 THEGQ9P2T0 379 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 YBX2Q9Y2T7 364 aaKnown RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 MAFBQ9Y5Q3 323 aaPredicted RBP9.12□□□□□ -0.95
VPS53-214ENST00000572607 CDY2AQ9Y6F7 541 aa9.12□□□□□ -0.95
VPS53-214ENST00000572607 IGSF9BQ9UPX0 1349 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 COL4A4P53420 1690 aaPredicted RBP9.11□□□□□ -0.95
VPS53-214ENST00000572607 NRG2O14511 850 aaPredicted RBP9.11□□□□□ -0.95
VPS53-214ENST00000572607 TBX3O15119 743 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 DTNBO60941 627 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 PSMD10O75832 226 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 GJB5O95377 273 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 CHRNA1P02708 482 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 OATP04181 439 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 BMP1P13497 986 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 MYOGP15173 224 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 TMOD1P28289 359 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 DEFB103AP81534 67 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 PRKCEQ02156 737 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 MGAT3Q09327 533 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 TMEM62Q0P6H9 643 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 ODR4Q5SWX8 454 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 KRT40Q6A162 431 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 FAM117BQ6P1L5 589 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 TSHZ1Q6ZSZ6 1077 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms