RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 UGCGQ16739 394 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 KIZQ2M2Z5 673 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 NAALADL2Q58DX5 795 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 ZNF746Q6NUN9 644 aaPredicted RBP7.63□□□□□ -1.19
VPS53-213ENST00000572334 B3GNT9Q6UX72 402 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 LRRC55Q6ZSA7 311 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 EP400NLQ6ZTU2 488 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 POF1BQ8WVV4 589 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 BBXQ8WY36 941 aaPredicted RBP7.63□□□□□ -1.19
VPS53-213ENST00000572334 GJA10Q969M2 543 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 FAM122AQ96E09 287 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 JAKMIP1Q96N16 626 aaKnown RBP7.63□□□□□ -1.19
VPS53-213ENST00000572334 CEP89Q96ST8 783 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 PPP1R16BQ96T49 567 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 OSMRQ99650 979 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 ADAM2Q99965 735 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 GLT8D2Q9H1C3 349 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 ADAMTS10Q9H324 1103 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 IGFLR1Q9H665 355 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 CWH43Q9H720 699 aa7.63□□□□□ -1.19
VPS53-213ENST00000572334 C2orf16Q68DN1 1984 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 M0QZ92 97 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 M0R2N6 131 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 BACH1O14867 736 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 FSCN2O14926 492 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 MSH4O15457 936 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 DCXO43602 365 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 VTNP04004 478 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 HMGB1P09429 215 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 STAG3L1P0CL83 205 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 FGFR1P11362 822 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 IFNAR1P17181 557 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 PDIA3P30101 505 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 SSTR3P32745 418 aaPredicted RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 CLCN3P51790 818 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 CRYBB1P53674 252 aaPredicted RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 ERVFC1P60507 584 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 SETQ01105 290 aaPredicted RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 COASYQ13057 564 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 SMAD4Q13485 552 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 TOB2Q14106 344 aaPredicted RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 PRR16Q569H4 304 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 FAM160B1Q5W0V3 765 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 MIS18BP1Q6P0N0 1132 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 SLC24A5Q71RS6 500 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 SMAP1Q8IYB5 467 aaPredicted RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 REXO1Q8N1G1 1221 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 EFHBQ8N7U6 833 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 SMRP1Q8NCR6 262 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 TNPO1Q92973 898 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 ZNF577Q9BSK1 485 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 RNF26Q9BY78 433 aaPredicted RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 NCOA5Q9HCD5 579 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 TBC1D22BQ9NU19 505 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 TYW1Q9NV66 732 aaKnown RBP7.62□□□□□ -1.19
VPS53-213ENST00000572334 VPS54Q9P1Q0 977 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 GABBR1Q9UBS5 961 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 CD207Q9UJ71 328 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 GINS2Q9Y248 185 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 DENND4AQ7Z401 1863 aa7.62□□□□□ -1.19
VPS53-213ENST00000572334 DOCK6Q96HP0 2047 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 TBKBP1A7MCY6 615 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 LOC730098B7Z3J9 87 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 PER2O15055 1255 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 FGF18O76093 207 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 ALADP13716 330 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 ATF7P17544 494 aaPredicted RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 ANP32AP39687 249 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 NRIP1P48552 1158 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 NLRP11P59045 1033 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 CCT2P78371 535 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 DRP2Q13474 957 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 CBX2Q14781 532 aaPredicted RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 TARBP2Q15633 366 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 HERC4Q5GLZ8 1057 aaPredicted RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 CLLU1OSQ5K130 101 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 BLOC1S2Q6QNY1 142 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 TRMT1LQ7Z2T5 733 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 RBM23Q86U06 439 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 ZNF598Q86UK7 904 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 RNF135Q8IUD6 432 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 LRRC71Q8N4P6 559 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 COLGALT1Q8NBJ5 622 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 SLC5A5Q92911 643 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 ZNF668Q96K58 619 aaPredicted RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 MBOAT7Q96N66 472 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 CASD1Q96PB1 797 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 UNC45AQ9H3U1 944 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 ELAC1Q9H777 363 aaKnown RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 C6orf50Q9HD87 102 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 C1orf112Q9NSG2 853 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 TMEM161AQ9NX61 479 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 MUTYHQ9UIF7 546 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 NAP1L2Q9ULW6 460 aaPredicted RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 BARX2Q9UMQ3 279 aaPredicted RBP7.61□□□□□ -1.19
VPS53-213ENST00000572334 HCN4Q9Y3Q4 1203 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 PCDHB7Q9Y5E2 793 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 PCDHA10Q9Y5I2 948 aa7.61□□□□□ -1.19
VPS53-213ENST00000572334 DOCK8Q8NF50 2099 aa7.6□□□□□ -1.19
VPS53-213ENST00000572334 CYP3A7-CYP3A51PA0A087WV96 503 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms