RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CD58P19256 250 aa16.52■□□□□ 0.23
CIITA-204ENST00000570546 PPP2R2AP63151 447 aa16.52■□□□□ 0.23
CIITA-204ENST00000570546 GPSM2P81274 684 aa16.52■□□□□ 0.23
CIITA-204ENST00000570546 DARS2Q6PI48 645 aaKnown RBP16.52■□□□□ 0.23
CIITA-204ENST00000570546 PADI6Q6TGC4 694 aa16.52■□□□□ 0.23
CIITA-204ENST00000570546 DDX23Q9BUQ8 820 aaKnown RBP16.52■□□□□ 0.23
CIITA-204ENST00000570546 CNOT8Q9UFF9 292 aaKnown RBP16.52■□□□□ 0.23
CIITA-204ENST00000570546 PPLO60437 1756 aa16.52■□□□□ 0.23
CIITA-204ENST00000570546 ZNF233A6NK53 670 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 GRIN1Q05586 938 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 ZNF211Q13398 564 aaPredicted RBP16.51■□□□□ 0.23
CIITA-204ENST00000570546 PDIA5Q14554 519 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 NUGGCQ68CJ6 796 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 XXYLT1Q8NBI6 393 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 AGPAT5Q9NUQ2 364 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 ANAPC7Q9UJX3 599 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 RCN2Q14257 317 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 SBK1Q52WX2 424 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 MMS22LQ6ZRQ5 1243 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 SCYL3Q8IZE3 742 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 VIPAS39Q9H9C1 493 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 TRPC5Q9UL62 973 aaPredicted RBP16.51■□□□□ 0.23
CIITA-204ENST00000570546 SCINQ9Y6U3 715 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 PREX1Q8TCU6 1659 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 FAM196BA6NMK8 535 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 AP5Z1O43299 807 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 CPP00450 1065 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.51■□□□□ 0.23
CIITA-204ENST00000570546 GMNCA6NCL1 334 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 INO80B-WBP1J3KQ70 363 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 SESTD1Q86VW0 696 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 NLRP14Q86W24 1093 aa16.51■□□□□ 0.23
CIITA-204ENST00000570546 CCDC117Q8IWD4 279 aaPredicted RBP16.51■□□□□ 0.23
CIITA-204ENST00000570546 INO80BQ9C086 356 aaPredicted RBP16.51■□□□□ 0.23
CIITA-204ENST00000570546 SYNJ2BP-COX16A0A087WUM0 186 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 RAD17O75943 681 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 PDE1BQ01064 536 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 E2F4Q16254 413 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 FRMD5Q7Z6J6 570 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 COX16Q9P0S2 106 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 NXF1Q9UBU9 619 aaKnown RBP16.5■□□□□ 0.23
CIITA-204ENST00000570546 DIP2BQ9P265 1576 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 TLR3O15455 904 aaKnown RBP16.5■□□□□ 0.23
CIITA-204ENST00000570546 OPHN1O60890 802 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 USP11P51784 963 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 JAK3P52333 1124 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 BEND6Q5SZJ8 279 aaPredicted RBP16.5■□□□□ 0.23
CIITA-204ENST00000570546 CENPUQ71F23 418 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 PFDN4Q9NQP4 134 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 PTPAQ15257 358 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 HACE1Q8IYU2 909 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 CALN1Q9BXU9 219 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 OVOS2A0A0G2JMS6 1433 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 PPP1R3GB7ZBB8 358 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 HDLBPQ00341 1268 aaKnown RBP16.5■□□□□ 0.23
CIITA-204ENST00000570546 GABPAQ06546 454 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 TBC1D1Q86TI0 1168 aaPredicted RBP16.5■□□□□ 0.23
CIITA-204ENST00000570546 MSTO1Q9BUK6 570 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 SLITRK6Q9H5Y7 841 aa16.5■□□□□ 0.23
CIITA-204ENST00000570546 MAP2P11137 1827 aaKnown RBP16.5■□□□□ 0.23
CIITA-204ENST00000570546 NPHP3-ACAD11A0A0J9YXS1 232 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 AKR1B1P15121 316 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 REXO1L1PQ8IX06 675 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 CNTNAP5Q8WYK1 1306 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 SAT1P21673 171 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 MAP3K14Q99558 947 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 BCS1LQ9Y276 419 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 ABCB11O95342 1321 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 CD163L1Q9NR16 1453 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 VAMP7P51809 220 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 NUP85Q9BW27 656 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 TACC3Q9Y6A5 838 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 CA4P22748 312 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 SERPINB6P35237 376 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 MTMR1Q13613 665 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 ZNF564Q8TBZ8 553 aaPredicted RBP16.49■□□□□ 0.23
CIITA-204ENST00000570546 IFT122Q9HBG6 1241 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 SAYSD1Q9NPB0 183 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 WDR91A4D1P6 747 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 PSMD14O00487 310 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 SOX5P35711 763 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 BBS9Q3SYG4 887 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 ARHGEF1Q92888 912 aaKnown RBP16.49■□□□□ 0.23
CIITA-204ENST00000570546 MASTLQ96GX5 879 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 MS4A14Q96JA4 679 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 EIF2AK1Q9BQI3 630 aaKnown RBP16.49■□□□□ 0.23
CIITA-204ENST00000570546 ZNF341Q9BYN7 854 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 SEL1LQ9UBV2 794 aa16.49■□□□□ 0.23
CIITA-204ENST00000570546 CHRNA3P32297 505 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 SCARA5Q6ZMJ2 495 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 GLYCTKQ8IVS8 523 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 GIMAP8Q8ND71 665 aaPredicted RBP16.48■□□□□ 0.23
CIITA-204ENST00000570546 STXBP3O00186 592 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 TJP3O95049 919 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 FTLP02792 175 aaPredicted RBP16.48■□□□□ 0.23
CIITA-204ENST00000570546 STK4Q13043 487 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 SLFN12LQ6IEE8 588 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 PYROXD1Q8WU10 500 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 CFAP36Q96G28 342 aa16.48■□□□□ 0.23
CIITA-204ENST00000570546 TUBB6Q9BUF5 446 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms