RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TRIM43Q96BQ3 446 aaPredicted RBP10.37□□□□□ -0.75
VPS35-211ENST00000569950 BHMT2Q9H2M3 363 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 TCEAL9Q9UHQ7 104 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 TUBE1Q9UJT0 475 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 PCDHA2Q9Y5H9 948 aa10.37□□□□□ -0.75
VPS35-211ENST00000569950 RRN3P2A6NIE6 340 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 PQBP1O60828 265 aaKnown RBP10.36□□□□□ -0.75
VPS35-211ENST00000569950 PLA2G4BP0C869 781 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 CYP11B2P19099 503 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 CHMP4BP1P59074 171 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 IGBP1P78318 339 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 MGAT3Q09327 533 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 MCM6Q14566 821 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 PTGISQ16647 500 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 LONRF3Q496Y0 759 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 XKR9Q5GH70 373 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 FAM47CQ5HY64 1035 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 POTEHQ6S545 545 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 PADI6Q6TGC4 694 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 RPAINQ86UA6 219 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 LRRC71Q8N4P6 559 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 PDILTQ8N807 584 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 BSNDQ8WZ55 320 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 DNAJC19Q96DA6 116 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 NOC4LQ9BVI4 516 aaKnown RBP10.36□□□□□ -0.75
VPS35-211ENST00000569950 SEZ6LQ9BYH1 1024 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 NT5C3AQ9H0P0 336 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 WNT8AQ9H1J5 351 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 POLD4Q9HCU8 107 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 GPRC5CQ9NQ84 441 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 NRBP2Q9NSY0 501 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 KBTBD4Q9NVX7 518 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 STK17AQ9UEE5 414 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 KCNH3Q9ULD8 1083 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 STK24Q9Y6E0 443 aa10.36□□□□□ -0.75
VPS35-211ENST00000569950 NPHP3-ACAD11A0A0J9YXS1 232 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 SMIM35A0A1B0GVV1 85 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 MYMKA6NI61 221 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 KIAA0355O15063 1070 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 POLR2DO15514 142 aaKnown RBP10.35□□□□□ -0.75
VPS35-211ENST00000569950 DKC1O60832 514 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS35-211ENST00000569950 NR1I2O75469 434 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 CASP1P29466 404 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 ARL2P36404 184 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 CLCN3P51790 818 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 MDM2Q00987 491 aaPredicted RBP10.35□□□□□ -0.75
VPS35-211ENST00000569950 PTK7Q13308 1070 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 EMC2Q15006 297 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 ZRSR1Q15695 479 aaKnown RBP10.35□□□□□ -0.75
VPS35-211ENST00000569950 CKAP2LQ8IYA6 745 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 GRAMD1CQ8IYS0 662 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 ASAP3Q8TDY4 903 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 MRPS27Q92552 414 aaKnown RBP10.35□□□□□ -0.75
VPS35-211ENST00000569950 LARP4BQ92615 738 aaKnown RBP10.35□□□□□ -0.75
VPS35-211ENST00000569950 VTI1AQ96AJ9 217 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 CALML4Q96GE6 196 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 CEP170P1Q96L14 293 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 FIZ1Q96SL8 496 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 ADAMTS10Q9H324 1103 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 CDHR5Q9HBB8 845 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 BMP2KQ9NSY1 1161 aaPredicted RBP10.35□□□□□ -0.75
VPS35-211ENST00000569950 SERTAD1Q9UHV2 236 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 DNM3Q9UQ16 869 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 ATP11BQ9Y2G3 1177 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 PPME1Q9Y570 386 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 LAMA3Q16787 3333 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 CHD9Q3L8U1 2897 aa10.35□□□□□ -0.75
VPS35-211ENST00000569950 MICAL3Q7RTP6 2002 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 ADGRA3Q8IWK6 1321 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 RSPH10B2B2RC85 870 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 USO1O60763 962 aaKnown RBP10.34□□□□□ -0.75
VPS35-211ENST00000569950 GPR32O75388 356 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 PRPF40AO75400 957 aaKnown RBP10.34□□□□□ -0.75
VPS35-211ENST00000569950 CHRNA1P02708 482 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 RSPH10BP0C881 870 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 GLRA2P23416 452 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 GUCY2CP25092 1073 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 RFC5P40937 340 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 ZNF131P52739 623 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 TCTN1Q2MV58 587 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 FAM26DQ5JW98 314 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 RRAGBQ5VZM2 374 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 EFCAB12Q6NXP0 572 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 CNNM4Q6P4Q7 775 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 OTUD6AQ7L8S5 288 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 KSR1Q8IVT5 923 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 GPT2Q8TD30 523 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 TMEM40Q8WWA1 233 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 DNAJB3Q8WWF6 145 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 STAMQ92783 540 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 TMEM143Q96AN5 459 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 DHX58Q96C10 678 aa10.34□□□□□ -0.75
VPS35-211ENST00000569950 MROH7Q68CQ1 1323 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 FRMD3A2A2Y4 597 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 ARHGEF35A5YM69 484 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 MAGEB2O15479 319 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 KLRC4O43908 158 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 DGAT1O75907 488 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 ZNF202O95125 648 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 VTNP04004 478 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms