RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 EFHBQ8N7U6 833 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 CCDC148Q8NFR7 591 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 LENG9Q96B70 501 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 MSLNLQ96KJ4 702 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 RNF26Q9BY78 433 aaPredicted RBP16.91■□□□□ 0.3
CLN3-228ENST00000567804 GABBR1Q9UBS5 961 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 TCEAL9Q9UHQ7 104 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 CEP131Q9UPN4 1083 aa16.91■□□□□ 0.3
CLN3-228ENST00000567804 TBKBP1A7MCY6 615 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 GPR32O75388 356 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 HOXD11P31277 338 aaPredicted RBP16.9■□□□□ 0.3
CLN3-228ENST00000567804 NRIP1P48552 1158 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 AKAP17AQ02040 695 aaKnown RBP16.9■□□□□ 0.3
CLN3-228ENST00000567804 UBE3AQ05086 875 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 TRMT1LQ7Z2T5 733 aaKnown RBP16.9■□□□□ 0.3
CLN3-228ENST00000567804 METTL13Q8N6R0 699 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 LINC01465Q8N7H1 131 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 FAM167AQ96KS9 214 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 POP1Q99575 1024 aaKnown RBP16.9■□□□□ 0.3
CLN3-228ENST00000567804 CLEC1BQ9P126 229 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 PCDHB12Q9Y5F1 795 aa16.9■□□□□ 0.3
CLN3-228ENST00000567804 ZNF318Q5VUA4 2279 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 WDR64B1ANS9 1081 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 MAGEB2O15479 319 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 EDIL3O43854 480 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 PPFIA3O75145 1194 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 EYA4O95677 639 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 GLP2RO95838 553 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 IFNAR1P17181 557 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 CLCN3P51790 818 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 DSC3Q14574 896 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 CSPP1Q1MSJ5 1256 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 SPOUT1Q5T280 376 aaKnown RBP16.89■□□□□ 0.29
CLN3-228ENST00000567804 UPF3BQ9BZI7 483 aaKnown RBP16.89■□□□□ 0.29
CLN3-228ENST00000567804 ELAC1Q9H777 363 aaKnown RBP16.89■□□□□ 0.29
CLN3-228ENST00000567804 AAASQ9NRG9 546 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 TMEM161AQ9NX61 479 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 VPS54Q9P1Q0 977 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 HCSTQ9UBK5 93 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 SAMM50Q9Y512 469 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 PCDHGC5Q9Y5F6 944 aa16.89■□□□□ 0.29
CLN3-228ENST00000567804 TRIOO75962 3097 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 ZNF862O60290 1169 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 FAM189BP81408 668 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 COASYQ13057 564 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 EFCAB12Q6NXP0 572 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 RBM23Q86U06 439 aaKnown RBP16.88■□□□□ 0.29
CLN3-228ENST00000567804 COLGALT1Q8NBJ5 622 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 SMRP1Q8NCR6 262 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 MAP7D2Q96T17 732 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 SLC26A6Q9BXS9 759 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 ATP6V0A4Q9HBG4 840 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 TLR9Q9NR96 1032 aa16.88■□□□□ 0.29
CLN3-228ENST00000567804 TYW1Q9NV66 732 aaKnown RBP16.88■□□□□ 0.29
CLN3-228ENST00000567804 TECTAO75443 2155 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 MSH4O15457 936 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 FGF18O76093 207 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 OATP04181 439 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 FGFR1P11362 822 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 PDIA3P30101 505 aaKnown RBP16.87■□□□□ 0.29
CLN3-228ENST00000567804 EVCP57679 992 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 NLRP11P59045 1033 aaKnown RBP16.87■□□□□ 0.29
CLN3-228ENST00000567804 CCT2P78371 535 aaKnown RBP16.87■□□□□ 0.29
CLN3-228ENST00000567804 PRKCEQ02156 737 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 RNF135Q8IUD6 432 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 THNSL1Q8IYQ7 743 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 LRRC71Q8N4P6 559 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 CCDC136Q96JN2 1154 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 CWH43Q9H720 699 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 TLE6Q9H808 572 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 NCOA5Q9HCD5 579 aaKnown RBP16.87■□□□□ 0.29
CLN3-228ENST00000567804 DISC1Q9NRI5 854 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 BARX2Q9UMQ3 279 aaPredicted RBP16.87■□□□□ 0.29
CLN3-228ENST00000567804 AKT3Q9Y243 479 aa16.87■□□□□ 0.29
CLN3-228ENST00000567804 NEFLP07196 543 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 CENPBP07199 599 aaPredicted RBP16.86■□□□□ 0.29
CLN3-228ENST00000567804 LAG3P18627 525 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 PSMA5P28066 241 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 TMOD1P28289 359 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 USP11P51784 963 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 UGCGQ16739 394 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 HERC4Q5GLZ8 1057 aaPredicted RBP16.86■□□□□ 0.29
CLN3-228ENST00000567804 SLC5A5Q92911 643 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 RIT2Q99578 217 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 TMEM117Q9H0C3 514 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 ADAMTS10Q9H324 1103 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 SH3GLB2Q9NR46 395 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 NRBP2Q9NSY0 501 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 MUTYHQ9UIF7 546 aa16.86■□□□□ 0.29
CLN3-228ENST00000567804 FSCN2O14926 492 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 CHMP2AO43633 222 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 GAS7O60861 476 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 REC8O95072 547 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 EIF4BP23588 611 aaKnown RBP16.85■□□□□ 0.29
CLN3-228ENST00000567804 SFNP31947 248 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 GPC3P51654 580 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 NLRP5P59047 1200 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 ERVFC1P60507 584 aa16.85■□□□□ 0.29
CLN3-228ENST00000567804 DUSP6Q16828 381 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms