RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 NCAPH2Q6IBW4 605 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 OTOP1Q7RTM1 612 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 HELQQ8TDG4 1101 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 LPAR1Q92633 364 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 EEF2KMTQ96G04 330 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 NAPGQ99747 312 aaPredicted RBP7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 TMEM39BQ9GZU3 492 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 KCTD10Q9H3F6 313 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 NHEJ1Q9H9Q4 299 aaPredicted RBP7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 CYLDQ9NQC7 956 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 OGFRQ9NZT2 677 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 VAV3Q9UKW4 847 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 TRAF3IP3Q9Y228 551 aa7.99□□□□□ -1.13
HERPUD1-209ENST00000564678 TNFRSF10BO14763 440 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 CETN3O15182 167 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 PSMD10O75832 226 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 ATF4P18848 351 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 HOXA13P31271 388 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 STAT3P40763 770 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 GHRHRQ02643 423 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 LRRC41Q15345 812 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 MAP9Q49MG5 647 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 CEP55Q53EZ4 464 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 RSRC2Q7L4I2 434 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 KRT26Q7Z3Y9 468 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 PRPF38AQ8NAV1 312 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SCFD1Q8WVM8 642 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 RABGGTAQ92696 567 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SYN2Q92777 582 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 HSD17B14Q9BPX1 270 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 HINFPQ9BQA5 517 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 EIF2AK1Q9BQI3 630 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 WDR11Q9BZH6 1224 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 IRX2Q9BZI1 471 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 PDGFDQ9GZP0 370 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 MYOZ2Q9NPC6 264 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 KCND2Q9NZV8 630 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 V9GYY5 206 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 GOLGB1Q14789 3259 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SMCHD1A6NHR9 2005 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 COL4A5P29400 1685 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 POTEFA5A3E0 1075 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 MEIS1O00470 390 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 PDXKO00764 312 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 WDR46O15213 610 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 ATP8B1O43520 1251 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 ICAM1P05362 532 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 POTEIP0CG38 1075 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 BCRP11274 1271 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 GAP43P17677 238 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 ZNF280AP59817 542 aaPredicted RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 ADAM9Q13443 819 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 KNOP1Q1ED39 458 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 BMT2Q1RMZ1 405 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 CCDC40Q4G0X9 1142 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 DALRD3Q5D0E6 543 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 FBXO38Q6PIJ6 1188 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 POTEGQ6S5H5 508 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 POTEEQ6S8J3 1075 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SRGAP1Q7Z6B7 1085 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 LDHDQ86WU2 507 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 TRIM59Q8IWR1 403 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SLC35F6Q8N357 371 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 TXLNBQ8N3L3 684 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 NEK11Q8NG66 645 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SLC5A5Q92911 643 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 ZDHHC16Q969W1 377 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 CCDC42Q96M95 316 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 PRKD2Q9BZL6 878 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 TSGA10Q9BZW7 698 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 TAOK3Q9H2K8 898 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 OLFML3Q9NRN5 406 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 FKBPLQ9UIM3 349 aa7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 REXO2Q9Y3B8 237 aaKnown RBP7.98□□□□□ -1.13
HERPUD1-209ENST00000564678 SSU72P8A0A1W2PR75 194 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 PHF20L1A8MW92 1017 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 POTEB2H3BUK9 544 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 CALUO43852 315 aaPredicted RBP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 USO1O60763 962 aaKnown RBP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 SLITRK3O94933 977 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 LCA5LO95447 670 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 TUBBP07437 444 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 HSD17B4P51659 736 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 PSMC6P62333 389 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 SPA17Q15506 151 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 WHAMMP3Q1A5X7 153 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 LRCH2Q5VUJ6 765 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 MIGA2Q7L4E1 593 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 EPM2AIP1Q7L775 607 aaPredicted RBP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 NIPA1Q7RTP0 329 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 FRMD5Q7Z6J6 570 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 GPATCH11Q8N954 259 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 GLIS3Q8NEA6 775 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 CYP2W1Q8TAV3 490 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 NEK9Q8TD19 979 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 GOLGA1Q92805 767 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 RIT2Q99578 217 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 OCSTAMPQ9BR26 566 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 MMRN2Q9H8L6 949 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms