RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SIX2Q9NPC8 291 aa14.72□□□□□ -0.05
CLK3-215ENST00000564353 ACP6Q9NPH0 428 aa14.72□□□□□ -0.05
CLK3-215ENST00000564353 LUC7LQ9NQ29 371 aaKnown RBP14.72□□□□□ -0.05
CLK3-215ENST00000564353 HOMER2Q9NSB8 354 aa14.72□□□□□ -0.05
CLK3-215ENST00000564353 NR2E1Q9Y466 385 aa14.72□□□□□ -0.05
CLK3-215ENST00000564353 PCDHGC5Q9Y5F6 944 aa14.72□□□□□ -0.05
CLK3-215ENST00000564353 ERVK-9P63128 1117 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 AADACL2Q6P093 401 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 GBP6Q6ZN66 633 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 PODNQ7Z5L7 613 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 FAM186BQ8IYM0 893 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 MSL3Q8N5Y2 521 aaKnown RBP14.71□□□□□ -0.05
CLK3-215ENST00000564353 USP38Q8NB14 1042 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 HOOK2Q96ED9 719 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 MASTLQ96GX5 879 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 NEUROG2Q9H2A3 272 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 SUGT1Q9Y2Z0 365 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 MYH4Q9Y623 1939 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 MYO3BQ8WXR4 1341 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 IGSF9BQ9UPX0 1349 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 EVI5O60447 810 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 KIF4AO95239 1232 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 USP8P40818 1118 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 AP3B2Q13367 1082 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 EPM2AIP1Q7L775 607 aaPredicted RBP14.71□□□□□ -0.05
CLK3-215ENST00000564353 PEX26Q7Z412 305 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 MKL1Q969V6 931 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 FAM84AQ96KN4 292 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 EDEM3Q9BZQ6 932 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 TRAF3IP3Q9Y228 551 aa14.71□□□□□ -0.05
CLK3-215ENST00000564353 TMEM110-MUSTN1A8MSY1 372 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 ODR4Q5SWX8 454 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 ZNF746Q6NUN9 644 aaPredicted RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 TATDN1Q6P1N9 297 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 NUCKS1Q9H1E3 243 aaKnown RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 RASSF4Q9H2L5 321 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 LRRC4CQ9HCJ2 640 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 TYW1Q9NV66 732 aaKnown RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 PITPNM2Q9BZ72 1349 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 ARFGEF1Q9Y6D6 1849 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 GAS7O60861 476 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 STAT2P52630 851 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 MARSP56192 900 aaKnown RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 DLG4P78352 724 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 Q4G0T1 1027 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 CEP85LQ5SZL2 805 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 FAM43BQ6ZT52 329 aaPredicted RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 OTOP1Q7RTM1 612 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 ZNF572Q7Z3I7 529 aaPredicted RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 FRMD5Q7Z6J6 570 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 LNX1Q8TBB1 728 aaPredicted RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 SYN2Q92777 582 aaPredicted RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 NOC2LQ9Y3T9 749 aaKnown RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 IGLV3-22A0A075B6J6 115 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 KRIT1O00522 736 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 GALCP54803 685 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 EMBQ6PCB8 327 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 FAM178BQ8IXR5 827 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 SYCP3Q8IZU3 236 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 NLGN1Q8N2Q7 840 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 PIK3R5Q8WYR1 880 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 AKT1S1Q96B36 256 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 RNPC3Q96LT9 517 aaKnown RBP14.7□□□□□ -0.06
CLK3-215ENST00000564353 MBOAT7Q96N66 472 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 DNAJC12Q9UKB3 198 aa14.7□□□□□ -0.06
CLK3-215ENST00000564353 PDXKO00764 312 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 C21orf2O43822 256 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 PDE6BP35913 854 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 SEC24CP53992 1094 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 DRAP1Q14919 205 aaPredicted RBP14.69□□□□□ -0.06
CLK3-215ENST00000564353 CPXCR1Q8N123 301 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 TPCN2Q8NHX9 752 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 GDF3Q9NR23 364 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 PLAAQ9Y263 795 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 ZMYM2Q9UBW7 1377 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 TTI1O43156 1089 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 SART1O43290 800 aaKnown RBP14.69□□□□□ -0.06
CLK3-215ENST00000564353 DAPK3O43293 454 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 SORBS3O60504 671 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 PPFIA4O75335 1185 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 EYA4O95677 639 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 PAK2Q13177 524 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 STRIP1Q5VSL9 837 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 ARHGEF26Q96DR7 871 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 NAP1L4Q99733 375 aaKnown RBP14.69□□□□□ -0.06
CLK3-215ENST00000564353 TRIM51Q9BSJ1 452 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 TMOD4Q9NZQ9 345 aa14.69□□□□□ -0.06
CLK3-215ENST00000564353 YDJCA8MPS7 323 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 FLOT1O75955 427 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 H2AFZP0C0S5 128 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 LIG3P49916 1009 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 GTF2A1P52655 376 aaPredicted RBP14.68□□□□□ -0.06
CLK3-215ENST00000564353 H2AFVQ71UI9 128 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 UBLCP1Q8WVY7 318 aaPredicted RBP14.68□□□□□ -0.06
CLK3-215ENST00000564353 AGBL1Q96MI9 1066 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 FAM20AQ96MK3 541 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 HSD17B14Q9BPX1 270 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 ZNF577Q9BSK1 485 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 TMEM39BQ9GZU3 492 aa14.68□□□□□ -0.06
CLK3-215ENST00000564353 UNC45AQ9H3U1 944 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms