RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 WDR72Q3MJ13 1102 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 GRAMD4Q6IC98 578 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 FKBP9P1Q75LS8 142 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 DDX46Q7L014 1031 aaKnown RBP4.71□□□□□ -1.66
VPS35-203ENST00000562420 KANSL1Q7Z3B3 1105 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 RALYLQ86SE5 291 aaKnown RBP4.71□□□□□ -1.66
VPS35-203ENST00000562420 C11orf74Q86VG3 221 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 NXPE1Q8N323 547 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 ZNF610Q8N9Z0 462 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 CARD11Q9BXL7 1154 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 WNT8AQ9H1J5 351 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 IFT22Q9H7X7 185 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 THG1LQ9NWX6 298 aaKnown RBP4.71□□□□□ -1.66
VPS35-203ENST00000562420 Q9UFV3 132 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 VWA7Q9Y334 891 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 SLC4A7Q9Y6M7 1214 aa4.71□□□□□ -1.66
VPS35-203ENST00000562420 TGM5O43548 720 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 B4GALT3O60512 393 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 ULK1O75385 1050 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 CPEP16870 476 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 PTX3P26022 381 aaPredicted RBP4.7□□□□□ -1.66
VPS35-203ENST00000562420 LSP1P33241 339 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 EPHB4P54760 987 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 IL2P60568 153 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 NFIXQ14938 502 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 SKOR2Q2VWA4 1001 aaPredicted RBP4.7□□□□□ -1.66
VPS35-203ENST00000562420 ZMAT1Q5H9K5 638 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 PHF19Q5T6S3 580 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 TRIM68Q6AZZ1 485 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 SLFN12LQ6IEE8 588 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 LRSAM1Q6UWE0 723 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 BMP8AQ7Z5Y6 402 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 C7orf31Q8N865 590 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 LEO1Q8WVC0 666 aaPredicted RBP4.7□□□□□ -1.66
VPS35-203ENST00000562420 USP7Q93009 1102 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 TTC1Q99614 292 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 PITHD1Q9GZP4 211 aaPredicted RBP4.7□□□□□ -1.66
VPS35-203ENST00000562420 SEC61A2Q9H9S3 476 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 EMC7Q9NPA0 242 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 TOMM22Q9NS69 142 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 KCMF1Q9P0J7 381 aa4.7□□□□□ -1.66
VPS35-203ENST00000562420 LAMTOR5O43504 91 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 PLATP00750 562 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 HMGCRP04035 888 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 CDK11BP21127 795 aaKnown RBP4.69□□□□□ -1.66
VPS35-203ENST00000562420 SESN2P58004 480 aaPredicted RBP4.69□□□□□ -1.66
VPS35-203ENST00000562420 CD83Q01151 205 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 SLC6A3Q01959 620 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 MOGSQ13724 837 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 NFYCQ13952 458 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 TERF2Q15554 542 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 KIAA1841Q6NSI8 718 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 TIGD7Q6NT04 549 aaPredicted RBP4.69□□□□□ -1.66
VPS35-203ENST00000562420 KBTBD2Q8IY47 623 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 RPGRQ92834 1020 aaKnown RBP4.69□□□□□ -1.66
VPS35-203ENST00000562420 LPPQ93052 612 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 SPTLC3Q9NUV7 552 aa4.69□□□□□ -1.66
VPS35-203ENST00000562420 H2AFY2Q9P0M6 372 aaPredicted RBP4.69□□□□□ -1.66
VPS35-203ENST00000562420 PMS2P1A4D2B8 440 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 FOXD2O60548 495 aaPredicted RBP4.68□□□□□ -1.66
VPS35-203ENST00000562420 EYA4O95677 639 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 CNR2P34972 360 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 SESN3P58005 492 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 FAPQ12884 760 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 MYBPC3Q14896 1274 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 DGKDQ16760 1214 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 ZNF568Q3ZCX4 644 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 UBXN11Q5T124 520 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 RNF187Q5TA31 235 aaPredicted RBP4.68□□□□□ -1.66
VPS35-203ENST00000562420 OTOP2Q7RTS6 562 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 BCL6BQ8N143 479 aaPredicted RBP4.68□□□□□ -1.66
VPS35-203ENST00000562420 OR5AN1Q8NGI8 311 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 GPR101Q96P66 508 aaPredicted RBP4.68□□□□□ -1.66
VPS35-203ENST00000562420 TUBGCP5Q96RT8 1024 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 SPC25Q9HBM1 224 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 DENND2AQ9ULE3 1009 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 INVSQ9Y283 1065 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 DUSP10Q9Y6W6 482 aa4.68□□□□□ -1.66
VPS35-203ENST00000562420 A0A0A6YYJ9 748 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.67□□□□□ -1.66
VPS35-203ENST00000562420 DNAJC6O75061 913 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 RGS3P49796 1198 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 PPP2CBP62714 309 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 PPP2CAP67775 309 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 ATP13A4Q4VNC1 1196 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 CCDC178Q5BJE1 867 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 CT47A1Q5JQC4 288 aaPredicted RBP4.67□□□□□ -1.66
VPS35-203ENST00000562420 PRAMEF9Q5VWM5 478 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 SLFN13Q68D06 897 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 ESPNLQ6ZVH7 1005 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 RASSF3Q86WH2 238 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 TTC9BQ8N6N2 239 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 RSAD2Q8WXG1 361 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 ERCC4Q92889 916 aaPredicted RBP4.67□□□□□ -1.66
VPS35-203ENST00000562420 SLC5A5Q92911 643 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 JADE2Q9NQC1 790 aa4.67□□□□□ -1.66
VPS35-203ENST00000562420 SBNO2Q9Y2G9 1366 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 NEMP1O14524 444 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 PRPF6O94906 941 aaKnown RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 CNOT4O95628 575 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms