RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TMEM199Q8N511 208 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 IQUBQ8NA54 791 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 MRPS27Q92552 414 aaKnown RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 LARP4BQ92615 738 aaKnown RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 EPSTI1Q96J88 318 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 SCLT1Q96NL6 688 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 PNMA5Q96PV4 448 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 LBHD1Q9BQE6 289 aaPredicted RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 NOC4LQ9BVI4 516 aaKnown RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 TIPINQ9BVW5 301 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 PPP1R12CQ9BZL4 782 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 LRRC27Q9C0I9 530 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 FAM49AQ9H0Q0 323 aaPredicted RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 CUEDC2Q9H467 287 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 DHX33Q9H6R0 707 aaKnown RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 SUGCTQ9HAC7 445 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 MAGEF1Q9HAY2 307 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 AKT3Q9Y243 479 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 CEP290O15078 2479 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 ALPK3Q96L96 1907 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 TMEM150BA6NC51 233 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 E9PMD0 336 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 GOLGA6L22H0YM25 854 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 TIMP1P01033 207 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 KRT18P05783 430 aaKnown RBP11.2□□□□□ -0.62
USP3-216ENST00000559873 CMA1P23946 247 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 MRPS6P82932 125 aaKnown RBP11.2□□□□□ -0.62
USP3-216ENST00000559873 ZNF200P98182 395 aaPredicted RBP11.2□□□□□ -0.62
USP3-216ENST00000559873 EFCAB12Q6NXP0 572 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 SHC4Q6S5L8 630 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 LRRC8DQ7L1W4 858 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 DNAJB3Q8WWF6 145 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 PSPC1Q8WXF1 523 aaKnown RBP11.2□□□□□ -0.62
USP3-216ENST00000559873 RAD54LQ92698 747 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 PLIN2Q99541 437 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 SH2D3AQ9BRG2 576 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 GDPD2Q9HCC8 539 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 ARID2Q68CP9 1835 aa11.2□□□□□ -0.62
USP3-216ENST00000559873 IGKV6-21A0A0C4DH24 114 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 RSPH10B2B2RC85 870 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 ASAP2O43150 1006 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 PFKMP08237 780 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CTSHP09668 335 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 PLA2G4BP0C869 781 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 RSPH10BP0C881 870 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CKBP12277 381 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CYP11B2P19099 503 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CLCN3P51790 818 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 AMPD3Q01432 767 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 TFDP1Q14186 410 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 HIC1Q14526 733 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 MXD4Q14582 209 aaPredicted RBP11.19□□□□□ -0.62
USP3-216ENST00000559873 ECM1Q16610 540 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 ODR4Q5SWX8 454 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 MFSD5Q6N075 450 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 RUFY4Q6ZNE9 571 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 USP49Q70CQ1 688 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 SV2BQ7L1I2 683 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 ZNF410Q86VK4 478 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CEP57L1Q8IYX8 460 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 LRRC71Q8N4P6 559 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 LINC01465Q8N7H1 131 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 PDILTQ8N807 584 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 SYT2Q8N9I0 419 aaPredicted RBP11.19□□□□□ -0.62
USP3-216ENST00000559873 FSIP1Q8NA03 581 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 TMEM87AQ8NBN3 555 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 KIFAP3Q92845 792 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CHAMP1Q96JM3 812 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 DRC1Q96MC2 740 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CTAGE1Q96RT6 745 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 CEP89Q96ST8 783 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 BMP2KQ9NSY1 1161 aaPredicted RBP11.19□□□□□ -0.62
USP3-216ENST00000559873 SUCLA2Q9P2R7 463 aaPredicted RBP11.19□□□□□ -0.62
USP3-216ENST00000559873 USP25Q9UHP3 1055 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 KCNG1Q9UIX4 513 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 KCNH3Q9ULD8 1083 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 ZMYND8Q9ULU4 1186 aaPredicted RBP11.19□□□□□ -0.62
USP3-216ENST00000559873 TRPV2Q9Y5S1 764 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 TANC1Q9C0D5 1861 aa11.19□□□□□ -0.62
USP3-216ENST00000559873 TRIM43BA6NCK2 446 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 ZBTB39O15060 712 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 TBCAO75347 108 aaKnown RBP11.18□□□□□ -0.62
USP3-216ENST00000559873 PFKFB1P16118 471 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 FPGSQ05932 587 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 PPIGQ13427 754 aaKnown RBP eCLIP11.18□□□□□ -0.624e-6■■■□□ 16
USP3-216ENST00000559873 PPP2R5AQ15172 486 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 TRIM71Q2Q1W2 868 aaKnown RBP11.18□□□□□ -0.62
USP3-216ENST00000559873 FAM102BQ5T8I3 360 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 FAM43BQ6ZT52 329 aaPredicted RBP11.18□□□□□ -0.62
USP3-216ENST00000559873 KCNK18Q7Z418 384 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 SH3RF1Q7Z6J0 888 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 GPBP1Q86WP2 473 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 RHPN2Q8IUC4 686 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 KIAA0319LQ8IZA0 1049 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 USP38Q8NB14 1042 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 NLRP7Q8WX94 980 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 DHX38Q92620 1227 aaKnown RBP11.18□□□□□ -0.62
USP3-216ENST00000559873 TRIM43Q96BQ3 446 aaPredicted RBP11.18□□□□□ -0.62
USP3-216ENST00000559873 DHX58Q96C10 678 aa11.18□□□□□ -0.62
USP3-216ENST00000559873 IFT74Q96LB3 600 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms