RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TYW1Q9NV66 732 aaKnown RBP10.4□□□□□ -0.74
HDDC3-204ENST00000559834 TMEM161AQ9NX61 479 aa10.4□□□□□ -0.74
HDDC3-204ENST00000559834 LZTS1Q9Y250 596 aa10.4□□□□□ -0.74
HDDC3-204ENST00000559834 SAMM50Q9Y512 469 aa10.4□□□□□ -0.74
HDDC3-204ENST00000559834 MAFBQ9Y5Q3 323 aaPredicted RBP10.4□□□□□ -0.74
HDDC3-204ENST00000559834 REV3LO60673 3130 aa10.4□□□□□ -0.75
HDDC3-204ENST00000559834 MUC6Q6W4X9 2439 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 IGLV3-22A0A075B6J6 115 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 LOC730098B7Z3J9 87 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 PER2O15055 1255 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 MGEA5O60502 916 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 ATF7P17544 494 aaPredicted RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 ATP4AP20648 1035 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 CDC27P30260 824 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 ADD1P35611 737 aaKnown RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 MRE11P49959 708 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 METAP2P50579 478 aaKnown RBP eCLIP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 AKAP17AQ02040 695 aaKnown RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 NHLH1Q02575 133 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 TRIM67Q6ZTA4 783 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 TRMT1LQ7Z2T5 733 aaKnown RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 ABI1Q8IZP0 508 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 REXO1Q8N1G1 1221 aaKnown RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 COLGALT1Q8NBJ5 622 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 BICD2Q8TD16 824 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 TMEM40Q8WWA1 233 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 PBXIP1Q96AQ6 731 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 FAM167AQ96KS9 214 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 MAP7D2Q96T17 732 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 OSMRQ99650 979 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 TMEM117Q9H0C3 514 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 FAM217BQ9NTX9 383 aaPredicted RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 BARX2Q9UMQ3 279 aaPredicted RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 USP15Q9Y4E8 981 aaPredicted RBP10.39□□□□□ -0.75
HDDC3-204ENST00000559834 XIRP2A4UGR9 3374 aa10.39□□□□□ -0.75
HDDC3-204ENST00000559834 ZBTB42B2RXF5 422 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 PRPF3O43395 683 aaKnown RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 GPR32O75388 356 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 C22orf31O95567 290 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 GLP2RO95838 553 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 VTNP04004 478 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 CIITAP33076 1130 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 PPM1AP35813 382 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 NLRP11P59045 1033 aaKnown RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 ERVFC1P60507 584 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 ZXDAP98168 799 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 CDC42EP1Q00587 391 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 PLCB3Q01970 1234 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 BMS1Q14692 1282 aaKnown RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 CBX2Q14781 532 aaPredicted RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 DUSP6Q16828 381 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 ADCK5Q3MIX3 580 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 PRR16Q569H4 304 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 EFCAB12Q6NXP0 572 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 TMEM184AQ6ZMB5 413 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 FAM228AQ86W67 206 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 SUGP1Q8IWZ8 645 aaKnown RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 RASEFQ8IZ41 740 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 CRYGNQ8WXF5 182 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 MRPS27Q92552 414 aaKnown RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 RPGRIP1Q96KN7 1286 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 PPP1R16BQ96T49 567 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 NGRNQ9NPE2 291 aaKnown RBP10.38□□□□□ -0.75
HDDC3-204ENST00000559834 GABBR1Q9UBS5 961 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 AKT3Q9Y243 479 aa10.38□□□□□ -0.75
HDDC3-204ENST00000559834 TMEM221A6NGB7 291 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 WDR64B1ANS9 1081 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 M0R296 226 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 FSCN2O14926 492 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 FGFR1P11362 822 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 HOXB8P17481 243 aaPredicted RBP10.37□□□□□ -0.75
HDDC3-204ENST00000559834 EIF4BP23588 611 aaKnown RBP10.37□□□□□ -0.75
HDDC3-204ENST00000559834 USP11P51784 963 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 DSC3Q14574 896 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 KCNT2Q6UVM3 1135 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 TMC7Q7Z402 723 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 CCDC148Q8NFR7 591 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 RASGRP4Q8TDF6 673 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 CASD1Q96PB1 797 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 TCF25Q9BQ70 676 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 CWH43Q9H720 699 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 DISC1Q9NRI5 854 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 SPG21Q9NZD8 308 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 PCDHGC5Q9Y5F6 944 aa10.37□□□□□ -0.75
HDDC3-204ENST00000559834 CARNS1A5YM72 827 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 CDC45O75419 566 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 EOMESO95936 686 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 SFNP31947 248 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 TECP42680 631 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 CLCN3P51790 818 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 SIGLEC14Q08ET2 396 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 APOBRQ0VD83 1088 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 ANKRD54Q6NXT1 300 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 BLOC1S2Q6QNY1 142 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 Q6ZUG5 572 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 ECHDC2Q86YB7 292 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 LRRC43Q8N309 656 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 RSPH1Q8WYR4 309 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 SUSD6Q92537 303 aa10.36□□□□□ -0.75
HDDC3-204ENST00000559834 BRF1Q92994 677 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms