RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 IQCDQ96DY2 449 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 VPS33BQ9H267 617 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 AGO4Q9HCK5 861 aaKnown RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 PPP1R9AQ9ULJ8 1098 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 ZNF541Q9H0D2 1346 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 NPEPPSP55786 919 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 SOX10P56693 466 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 BAATQ14032 418 aaPredicted RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 PGM5Q15124 567 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 ASIC2Q16515 512 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 KIAA0753Q2KHM9 967 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 PLA2G4FQ68DD2 849 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 DPY19L2P1Q6NXN4 242 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 RNF207Q6ZRF8 634 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 GSPT2Q8IYD1 628 aaKnown RBP11.64□□□□□ -0.55
CUX1-217ENST00000558836 TRPM4Q8TD43 1214 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 LPAR1Q92633 364 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 MS4A14Q96JA4 679 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 FUT8Q9BYC5 575 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 STK24Q9Y6E0 443 aa11.64□□□□□ -0.55
CUX1-217ENST00000558836 MYH11P35749 1972 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 K7ENM7 598 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 LCA5LO95447 670 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 FTCDO95954 541 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 GYS2P54840 703 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 BMT2Q1RMZ1 405 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 CBWD6Q4V339 395 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 CBWD3Q5JTY5 395 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 CBWD5Q5RIA9 395 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 ZNF571Q7Z3V5 609 aaPredicted RBP11.63□□□□□ -0.55
CUX1-217ENST00000558836 NLGN2Q8NFZ4 835 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 TRIM58Q8NG06 486 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 TSGA10Q9BZW7 698 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 FER1L6Q2WGJ9 1857 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 FRMPD4Q14CM0 1322 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 KIF13BQ9NQT8 1826 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 VWA5AO00534 786 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 GAP43P17677 238 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 MAPK7Q13164 816 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 ARHGEF16Q5VV41 709 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 ZNF662Q6ZS27 426 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 IRF2BP2Q7Z5L9 587 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 KIFC3Q9BVG8 833 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 AGPAT3Q9NRZ7 376 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 JRKLQ9Y4A0 524 aa11.63□□□□□ -0.55
CUX1-217ENST00000558836 ATAD5Q96QE3 1844 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 SSU72P8A0A1W2PR75 194 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 CCDC151A5D8V7 595 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 DLG4P78352 724 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 MAPK8IP2Q13387 824 aaPredicted RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 TUBB2AQ13885 445 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 BEND6Q5SZJ8 279 aaPredicted RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 MCF2L2Q86YR7 1114 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 CREG2Q8IUH2 290 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 SMAP1Q8IYB5 467 aaPredicted RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 RIT2Q99578 217 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 TUBB2BQ9BVA1 445 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 GBP3Q9H0R5 595 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 SNX12Q9UMY4 172 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 TMCO5BA8MYB1 307 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 EXOC3O60645 756 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 PALMO75781 387 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 GFPT2O94808 682 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 CCNE2O96020 404 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 HOXA7P31268 230 aaPredicted RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 PSMC2P35998 433 aaKnown RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 RARRES1P49788 294 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 BACE1P56817 501 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 SLC18A3Q16572 532 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 SNRNP48Q6IEG0 339 aaKnown RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 GBP6Q6ZN66 633 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 HS2ST1Q7LGA3 356 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 MSANTD4Q8NCY6 345 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 HDAC7Q8WUI4 952 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 ELMO3Q96BJ8 720 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 CCDC43Q96MW1 224 aaKnown RBP11.62□□□□□ -0.55
CUX1-217ENST00000558836 EDEM3Q9BZQ6 932 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 SIX2Q9NPC8 291 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 RNF146Q9NTX7 359 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 UBIAD1Q9Y5Z9 338 aa11.62□□□□□ -0.55
CUX1-217ENST00000558836 BACH1O14867 736 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 ZBED4O75132 1171 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 P4HBP07237 508 aaKnown RBP11.61□□□□□ -0.55
CUX1-217ENST00000558836 PTPRAP18433 802 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 YWHABP31946 246 aaKnown RBP11.61□□□□□ -0.55
CUX1-217ENST00000558836 PCNX4Q63HM2 1172 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 IQCEQ6IPM2 695 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 BORCS6Q96GS4 357 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 OSBPL9Q96SU4 736 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 PDCD2LQ9BRP1 358 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 CBWD1Q9BRT8 395 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 TLR10Q9BXR5 811 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 MTFR1LQ9H019 292 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 AIPL1Q9NZN9 384 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 TCEAL9Q9UHQ7 104 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 RPTORQ8N122 1335 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 QARSP47897 775 aaKnown RBP11.61□□□□□ -0.55
CUX1-217ENST00000558836 ZNF131P52739 623 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 SLC7A5Q01650 507 aa11.61□□□□□ -0.55
CUX1-217ENST00000558836 ZNF280CQ8ND82 737 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms