RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TNFRSF8P28908 595 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 JAM2P57087 298 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 BORCS6Q96GS4 357 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 SCAF8Q9UPN6 1271 aaKnown RBP14.06□□□□□ -0.16
LDLR-207ENST00000558013 DDX39AO00148 427 aaKnown RBP14.06□□□□□ -0.16
LDLR-207ENST00000558013 GALCP54803 685 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 CORO7P57737 925 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 AOC3Q16853 763 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 OTOP1Q7RTM1 612 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 MAATS1Q7Z4T9 603 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 PACS2Q86VP3 889 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 FAM20AQ96MK3 541 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 CSRNP1Q96S65 589 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 GLT8D2Q9H1C3 349 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 RNF14Q9UBS8 474 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 PLAAQ9Y263 795 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 NOC2LQ9Y3T9 749 aaKnown RBP14.06□□□□□ -0.16
LDLR-207ENST00000558013 GREB1LQ9C091 1923 aaPredicted RBP14.06□□□□□ -0.16
LDLR-207ENST00000558013 EYA4O95677 639 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 SEC24CP53992 1094 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 MOXD1Q6UVY6 613 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 PEX26Q7Z412 305 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 PODNQ7Z5L7 613 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 FAM186BQ8IYM0 893 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 IDI2Q9BXS1 227 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 TRIM31Q9BZY9 425 aa14.06□□□□□ -0.16
LDLR-207ENST00000558013 SCN9AQ15858 1988 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 ANKRD31Q8N7Z5 1873 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 CLRN2A0PK11 232 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 TCP10L2B9ZVM9 353 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 TBX3O15119 743 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 FAM13AO94988 1023 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 ARP10275 920 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 CHRNA5P30532 468 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 HPDP32754 393 aaPredicted RBP14.05□□□□□ -0.16
LDLR-207ENST00000558013 ARHGAP44Q17R89 818 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 CEP85LQ5SZL2 805 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 LRCH2Q5VUJ6 765 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 C1orf186Q6ZWK4 172 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 SCFD2Q8WU76 684 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 FIZ1Q96SL8 496 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 PPP1R9AQ9ULJ8 1098 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 KRIT1O00522 736 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 DAPK3O43293 454 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 ONECUT3O60422 494 aaPredicted RBP14.05□□□□□ -0.16
LDLR-207ENST00000558013 H2AFZP0C0S5 128 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 DRAP1Q14919 205 aaPredicted RBP14.05□□□□□ -0.16
LDLR-207ENST00000558013 UAP1Q16222 522 aaPredicted RBP14.05□□□□□ -0.16
LDLR-207ENST00000558013 AADACL2Q6P093 401 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 H2AFVQ71UI9 128 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 ZSWIM2Q8NEG5 633 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 SEPT11Q9NVA2 429 aaKnown RBP14.05□□□□□ -0.16
LDLR-207ENST00000558013 FBXO28Q9NVF7 368 aa14.05□□□□□ -0.16
LDLR-207ENST00000558013 LRRC37AA6NMS7 1700 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 TTI1O43156 1089 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 BUB1BO60566 1050 aaPredicted RBP14.04□□□□□ -0.16
LDLR-207ENST00000558013 FLOT1O75955 427 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 CIITAP33076 1130 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 ARHGEF26Q96DR7 871 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 GMCL1Q96IK5 515 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 RPL13P26373 211 aaKnown RBP14.04□□□□□ -0.16
LDLR-207ENST00000558013 ALDH1B1P30837 517 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 HSD17B3P37058 310 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 PRKCIP41743 596 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 LIG3P49916 1009 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 TNNC1P63316 161 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 DLG4P78352 724 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 ZNF211Q13398 564 aaPredicted RBP14.04□□□□□ -0.16
LDLR-207ENST00000558013 BMT2Q1RMZ1 405 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 SLC27A3Q5K4L6 730 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 RBM26Q5T8P6 1007 aaKnown RBP14.04□□□□□ -0.16
LDLR-207ENST00000558013 GMCL1P1Q8NEA9 526 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 RUBCNQ92622 972 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 ELMO3Q96BJ8 720 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 FAM107BQ9H098 131 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 DPH5Q9H2P9 285 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 TAF1DQ9H5J8 278 aaPredicted RBP14.04□□□□□ -0.16
LDLR-207ENST00000558013 DNAJC12Q9UKB3 198 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 NENFQ9UMX5 172 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 F8VZ95 297 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 BACH1O14867 736 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 PRPF4BQ13523 1007 aaKnown RBP14.04□□□□□ -0.16
LDLR-207ENST00000558013 NT5DC3Q86UY8 548 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 SLC35G2Q8TBE7 412 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 HOOK2Q96ED9 719 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 GPR88Q9GZN0 384 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 PCIF1Q9H4Z3 704 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 FAM169AQ9Y6X4 670 aa14.04□□□□□ -0.16
LDLR-207ENST00000558013 PSMD10O75832 226 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 FOSP01100 380 aaPredicted RBP14.03□□□□□ -0.16
LDLR-207ENST00000558013 STRIP1Q5VSL9 837 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 DCAF12L1Q5VU92 463 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 MASTLQ96GX5 879 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 TRIM51Q9BSJ1 452 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 POLR3CQ9BUI4 534 aaPredicted RBP14.03□□□□□ -0.16
LDLR-207ENST00000558013 GLIS2Q9BZE0 524 aaPredicted RBP14.03□□□□□ -0.16
LDLR-207ENST00000558013 TMX4Q9H1E5 349 aaPredicted RBP14.03□□□□□ -0.16
LDLR-207ENST00000558013 ACP6Q9NPH0 428 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 TMEM150BA6NC51 233 aa14.03□□□□□ -0.16
LDLR-207ENST00000558013 DCDC2CA8MYV0 355 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms