RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 FAM228AQ86W67 206 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 RAB11FIP4Q86YS3 637 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 KIAA0319LQ8IZA0 1049 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 NCOA7Q8NI08 942 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 FEZF2Q8TBJ5 459 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 PGBD1Q96JS3 809 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 MAP3K14Q99558 947 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 C1orf112Q9NSG2 853 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 TMEM161AQ9NX61 479 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 PCDHA6Q9UN73 950 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 SORCS3Q9UPU3 1222 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 PCDHA8Q9Y5H6 950 aa9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 U3KPZ7 1027 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-214ENST00000557507 NFASCO94856 1347 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 PATJQ8NI35 1801 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 GPR179Q6PRD1 2367 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 IGKV6D-21A0A0A0MT36 114 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 ZBTB42B2RXF5 422 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 CCNE2O96020 404 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 ASGR2P07307 311 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 KLRC1P26715 233 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 SMARCA1P28370 1054 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 KIF5BP33176 963 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 PLCB3Q01970 1234 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 DSC3Q14574 896 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 KIZQ2M2Z5 673 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 CCDC60Q8IWA6 550 aaPredicted RBP9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 UBALD2Q8IYN6 164 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 NME8Q8N427 588 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 OSMRQ99650 979 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 MXRA8Q9BRK3 442 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 SDF4Q9BRK5 362 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 ATP6V0A4Q9HBG4 840 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 NR2E1Q9Y466 385 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 HCFC2Q9Y5Z7 792 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 COL1A2P08123 1366 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 ARID2Q68CP9 1835 aa9.33□□□□□ -0.92
CCDC88C-214ENST00000557507 C2orf71A6NGG8 1288 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 DDX39AO00148 427 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 SH2B2O14492 632 aaPredicted RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 MAFGO15525 162 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 ATG7O95352 703 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 C22orf31O95567 290 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 VTNP04004 478 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 HOXB8P17481 243 aaPredicted RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 FAM189BP81408 668 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 CWF19L1Q69YN2 538 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 TYW1BQ6NUM6 668 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 KCNT2Q6UVM3 1135 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 HEATR3Q7Z4Q2 680 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 LRRC43Q8N309 656 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 CASP10Q92851 521 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 TNPO1Q92973 898 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 ZNF558Q96NG5 402 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 CASD1Q96PB1 797 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 LZTS2Q9BRK4 669 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 TMEM117Q9H0C3 514 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 ADAM7Q9H2U9 754 aa9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 RWDD1Q9H446 243 aaPredicted RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 AGO4Q9HCK5 861 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-214ENST00000557507 ACACBO00763 2458 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 MAP1BP46821 2468 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 BACH1O14867 736 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 GPR182O15218 404 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 PRC1O43663 620 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 HBP1O60381 514 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 CLASP2O75122 1294 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 GPR32O75388 356 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 ATP4AP20648 1035 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 PPM1AP35813 382 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 SLC26A2P50443 739 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 CRYBB1P53674 252 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 TPRNQ4KMQ1 711 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 CLLU1OSQ5K130 101 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 RARS2Q5T160 578 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 TTC22Q5TAA0 569 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 WWC2Q6AWC2 1192 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 ASTLQ6HA08 431 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 KANK3Q6NY19 840 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 ABHD15Q6UXT9 468 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 TMTC3Q6ZXV5 915 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 TMC7Q7Z402 723 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 SLC39A11Q8N1S5 342 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 CCDC82Q8N4S0 544 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 C12orf76Q8N812 135 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 TDRD5Q8NAT2 981 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 NKD2Q969F2 451 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 NECTIN4Q96NY8 510 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 ANO3Q9BYT9 981 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 ELAC1Q9H777 363 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 NGRNQ9NPE2 291 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 PUF60Q9UHX1 559 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 CNTNAP5Q8WYK1 1306 aa9.31□□□□□ -0.92
CCDC88C-214ENST00000557507 CHMLP26374 656 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 MTHFRP42898 656 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ID4P47928 161 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 GNAQP50148 359 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 CLCN3P51790 818 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ITIH3Q06033 890 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 SMC1AQ14683 1233 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms