RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ARFGEF1Q9Y6D6 1849 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 DNAJC8O75937 253 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 AKAP3O75969 853 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 UFL1O94874 794 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 RFX1P22670 979 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 SOX5P35711 763 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 GALCP54803 685 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 SPIRE1Q08AE8 756 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 XRCC4Q13426 336 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 NEDD9Q14511 834 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 SNCBQ16143 134 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 DCAF17Q5H9S7 520 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 ERMARDQ5T6L9 678 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 CPLX4Q7Z7G2 160 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 CATSPER3Q86XQ3 398 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 TEX2Q8IWB9 1127 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 U2AF1L4Q8WU68 220 aaKnown RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 CTNNBL1Q8WYA6 563 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-231ENST00000557433 VTI1AQ96AJ9 217 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 REEP2Q9BRK0 252 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 FAM129AQ9BZQ8 928 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 PARP2Q9UGN5 583 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 SERPINB13Q9UIV8 391 aa17.68■□□□□ 0.42
SHMT2-231ENST00000557433 UBE4BO95155 1302 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 GNPATO15228 680 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 TBCAO75347 108 aaKnown RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 FOSP01100 380 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 GSTA1P08263 222 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 ITGA4P13612 1032 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 DRD4P21917 467 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 HOXD13P35453 343 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 CASP5P51878 434 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 HADHBP55084 474 aaKnown RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 GPSM2P81274 684 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 CACNB1Q02641 598 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 PPATQ06203 517 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 SLC15A2Q16348 729 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 WLSQ5T9L3 541 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 DUPD1Q68J44 220 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 ANKS4BQ8N8V4 417 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 ETNPPLQ8TBG4 499 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 ZKSCAN4Q969J2 545 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 CCDC17Q96LX7 622 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 XPO6Q96QU8 1125 aaKnown RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 ERP44Q9BS26 406 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 OSBPL7Q9BZF2 842 aa17.67■□□□□ 0.42
SHMT2-231ENST00000557433 STMN4Q9H169 189 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 CNOT8Q9UFF9 292 aaKnown RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 CNOT7Q9UIV1 285 aaKnown RBP17.67■□□□□ 0.42
SHMT2-231ENST00000557433 POTEFA5A3E0 1075 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 USP17L10C9JJH3 530 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 ASAP2O43150 1006 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 FGGP02679 453 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 POTEIP0CG38 1075 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 PSMC2P35998 433 aaKnown RBP17.66■□□□□ 0.42
SHMT2-231ENST00000557433 DR1Q01658 176 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 ITIH4Q14624 930 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 TCEAL1Q15170 157 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 TCERG1LQ5VWI1 586 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 POTEGQ6S5H5 508 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 POTEEQ6S8J3 1075 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 PARP9Q8IXQ6 854 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 FUKQ8N0W3 1084 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 CRYGNQ8WXF5 182 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 POLR3CQ9BUI4 534 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-231ENST00000557433 TMEM109Q9BVC6 243 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 PABPC3Q9H361 631 aaKnown RBP17.66■□□□□ 0.42
SHMT2-231ENST00000557433 POLD4Q9HCU8 107 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 DAGLAQ9Y4D2 1042 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 ASTN1O14525 1302 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 DDX3YO15523 660 aaKnown RBP17.66■□□□□ 0.42
SHMT2-231ENST00000557433 C21orf2O43822 256 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 GGPS1O95749 300 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 TMOD1P28289 359 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 SLC8A1P32418 973 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 FLT3P36888 993 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 CYB5D1Q6P9G0 228 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 CERKQ8TCT0 537 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 NEK9Q8TD19 979 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 ATP8B4Q8TF62 1192 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 DCAF4Q8WV16 495 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 BORCS6Q96GS4 357 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 RUNDC3BQ96NL0 473 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 GOLPH3Q9H4A6 298 aa17.66■□□□□ 0.42
SHMT2-231ENST00000557433 MIF4GDA9UHW6 222 aaKnown RBP17.65■□□□□ 0.42
SHMT2-231ENST00000557433 EVI5O60447 810 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 BUB1BO60566 1050 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-231ENST00000557433 EYA4O95677 639 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 SPATA31C1P0DKV0 1188 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 SCTRP47872 440 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 PLS1Q14651 629 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 QPCTQ16769 361 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 TTBK2Q6IQ55 1244 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 RHOT2Q8IXI1 618 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 CNBD1Q8NA66 436 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 CCDC197Q8NCU1 140 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 SLC35G2Q8TBE7 412 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 CCT6BQ92526 530 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 RPGRQ92834 1020 aaKnown RBP17.65■□□□□ 0.42
SHMT2-231ENST00000557433 JPH2Q9BR39 696 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms